Add clingen and omim filters into the disease list

[matentzn]

Fixes #4 #3

Summary

ClinGen curated diseases and OMIM curated diseases are strong indicators for something being a treatable, diagnosable disease. We add both filters back here.

The disease list is only insignificantly increased to 18543 disease after this change.

Checklist

• [X] List has been rebuilt if changes are made to the list contents

General SOP for PRs

• The person that creates the PR should assign themselves
• Only the assigned person is allowed to merge a PR - not the reviewers
• Every PR that alters the disease list should be reviewed by at least 2 people from the disease list team

[elliottsharp]

@matentzn are you able to share an extract of ClinGen and OMIM diseases which are not already included? And also which of these diseases are leaf direct parents?

[matentzn]

@sabrinatoro at this stage, I think every single addition we get through adding filter should be sanctioned.. I would prefer if we get the exact list of diseases we should not be adding as part of the review.

If you think the clingen filter brings too many false positives, I will remove it again.

I will dimiss your review to not accidentally merge this.

[elliottsharp]

additional diseases from clingen non parent ancestors (n=12) and clingen leaf direct parents (n=146) are theoretically drug targetable and diagnosable so should be included in my view

new clingen leaf parent ancestors f_clingen = TRUE f_leaf = null f_icd_category = null f_orphanetdisorder = null f_orphanet_subtype = null f_omim = null f_omimps_descendent = null f_leaf_direct_parent = TRUE

new clingen non parent ancestors f_clingen = TRUE f_leaf = null f_icd_category = null f_orphanetdisorder = null f_orphanet_subtype = null f_omim = null f_omimps_descendent = null f_leaf_direct_parent = null

2024.08.09-clingen_diseases.xlsx