evo-design evo issues - Githubissues

evo-design / evo

Biological foundation modeling from molecular to genome scale

Apache License 2.0

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Embedding Generation

#93 callmest opened 2 days ago
0
Update Evo publication, models, data

#92 brianhie closed 1 week ago
1
NameError: name 'swap_mha_rope' is not defined"

#91 JinwnK opened 2 weeks ago
0
How to directly fine tune the instances created by StripedHyena instead of the classes encapsulated by Hugging Face

#90 qijishinidie opened 1 month ago
0
When I wanted to specify the evo-1-8k-base model for tokenizer, Evo kept using evo-1-131k-base instead

#89 CrazyHsu opened 1 month ago
1
Release of the data

#88 ReaganGen opened 1 month ago
0
GPU error with DataParallel

#86 UsmanMahmood8 opened 2 months ago
2
frameworks for FSDP and model/pipeline parallelism

#85 adrienchaton opened 2 months ago
14
Clarification on Fine-Tuning with Special Tokens (e.g., <cas9>) in Evo Model

#83 MarcAmil30 closed 2 months ago
1
why inference with kv cache have problems?

#82 objectnoppppppp opened 2 months ago
0
add triton to requirements

#81 brianhie closed 2 months ago
0
Pretrain

#80 multydoffer opened 3 months ago
0
update readme

#79 brianhie closed 4 months ago
0
fix: minor typos in hello_evo.ipynb

#78 vasa-develop closed 4 months ago
0
Update README.md to torch.no_grad()

#77 garykbrixi closed 4 months ago
0
Estimate Required RAM for inference

#76 fmaa23 opened 5 months ago
0
more prompt scheme documentation?

#65 pan-genome closed 5 months ago
1
Require for GWAS(genome wide association studies)

#64 1633347510 closed 5 months ago
1
Scoring Question

#63 MarcAmil30 closed 5 months ago
1
PEFT Prompt Tuning: forward() got an unexpected keyword argument 'inputs_embeds'

#62 mikeleske opened 6 months ago
1
issue on model.to("cuda") with device_map="auto"

#61 UmutAlihan opened 6 months ago
1
Memory usage?

#60 bio-rat closed 6 months ago
1
How can I use multiple graphics cards to fine tune this model

#59 qijishinidie closed 6 months ago
2
Limiting attention radius and extracting embeddings

#58 george-henderson closed 5 months ago
1
AttributeError: 'InferenceParams' object has no attribute 'fused_ft_kernel'

#57 qijishinidie closed 6 months ago
1
131k base seems to output non-DNA characters

#56 cosmicBboy closed 6 months ago
4
Load fixed Evo v1.1 model checkpoint

#55 brianhie closed 7 months ago
0
Update README.md

#54 Zymrael closed 7 months ago
0
ModuleNotFoundError: No module named 'transformers_modules.togethercomputer.evo-1-131k-base.9562f3fdc38f09b92594864c5e98264f1bfbca33.tokenizer'

#53 adrienchaton opened 7 months ago
8
hello_evo.ipynb code error

#52 yyyyyuzj closed 2 months ago
1
Scoring DNA with lineages

#51 hmms117 closed 5 months ago
1
T4 GPUs support? Any recommendation

#50 ggkngktrk opened 7 months ago
1
gene essentiality

#49 JunboShen closed 5 months ago
1
TORCH_HOME not used when downloading models

#48 james-vincent closed 7 months ago
2
Is it posisble for us to access the embeddings layer?

#47 HelloWorldLTY closed 5 months ago
2
Default pretrained_model_path is personal directory

#46 leannmlindsey closed 8 months ago
0
What was the train/val data split you used during pretraining?

#45 ricomnl opened 8 months ago
0
Fine-tune evo to achieve a sequence-level prediction

#44 jingliezhou opened 8 months ago
1
RNA sequence

#43 TiantianZhu110 closed 5 months ago
2
Err

#42 leilichun closed 8 months ago
1
Release of Pre-training Data Preprocess Scripts

#41 KatarinaYuan opened 8 months ago
1
Questions about the performance of evo

#40 HelloWorldLTY closed 8 months ago
1
OSError: togethercomputer/evo-1-131k-base does not appear to have a file named pytorch_model.bin, tf_model.h5, model.ckpt or flax_model.msgpack.

#39 jingliezhou closed 5 months ago
2
add links for colab and nitro bio wrapper

#38 exnx closed 8 months ago
0
Prompt for virus and plasmid generation

#37 apcamargo closed 5 months ago
1
Dose someone have idea about issues such as "'MHA' is not defined"?

#36 xmz111 closed 8 months ago
1
GPU memory usage

#35 WangLabTHU opened 8 months ago
1
Finetuning on a sequenceClassification task

#34 leannmlindsey opened 8 months ago
8
OpenGenome Dataset

#33 leannmlindsey closed 8 months ago
1
Extracting EVO representations rather than logits

#32 amoskalev opened 8 months ago
5