evo-design evo issues - Githubissues

evo-design / evo

Biological foundation modeling from molecular to genome scale

Apache License 2.0

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Update README.md to torch.no_grad()

#77 garykbrixi opened 3 days ago
0
Estimate Required RAM for inference

#76 fmaa23 opened 1 week ago
0
more prompt scheme documentation?

#65 pan-genome closed 2 weeks ago
1
Require for GWAS(genome wide association studies)

#64 1633347510 closed 2 weeks ago
1
Scoring Question

#63 MarcAmil30 closed 2 weeks ago
1
PEFT Prompt Tuning: forward() got an unexpected keyword argument 'inputs_embeds'

#62 mikeleske opened 1 month ago
0
issue on model.to("cuda") with device_map="auto"

#61 UmutAlihan opened 1 month ago
1
Memory usage?

#60 bio-rat closed 1 month ago
1
How can I use multiple graphics cards to fine tune this model

#59 qijishinidie closed 1 month ago
0
Limiting attention radius and extracting embeddings

#58 george-henderson closed 2 weeks ago
1
AttributeError: 'InferenceParams' object has no attribute 'fused_ft_kernel'

#57 qijishinidie closed 1 month ago
1
131k base seems to output non-DNA characters

#56 cosmicBboy closed 1 month ago
4
Load fixed Evo v1.1 model checkpoint

#55 brianhie closed 2 months ago
0
Update README.md

#54 Zymrael closed 2 months ago
0
ModuleNotFoundError: No module named 'transformers_modules.togethercomputer.evo-1-131k-base.9562f3fdc38f09b92594864c5e98264f1bfbca33.tokenizer'

#53 adrienchaton opened 2 months ago
7
hello_evo.ipynb code error

#52 yyyyyuzj opened 2 months ago
0
Scoring DNA with lineages

#51 hmms117 closed 2 weeks ago
1
T4 GPUs support? Any recommendation

#50 ggkngktrk opened 2 months ago
1
gene essentiality

#49 JunboShen closed 2 weeks ago
1
TORCH_HOME not used when downloading models

#48 james-vincent closed 2 months ago
2
Is it posisble for us to access the embeddings layer?

#47 HelloWorldLTY closed 2 weeks ago
2
Default pretrained_model_path is personal directory

#46 leannmlindsey closed 3 months ago
0
What was the train/val data split you used during pretraining?

#45 ricomnl opened 3 months ago
0
Fine-tune evo to achieve a sequence-level prediction

#44 jingliezhou opened 3 months ago
0
RNA sequence

#43 TiantianZhu110 closed 2 weeks ago
2
Err

#42 leilichun closed 3 months ago
1
Release of Pre-training Data Preprocess Scripts

#41 KatarinaYuan opened 3 months ago
1
Questions about the performance of evo

#40 HelloWorldLTY closed 3 months ago
1
OSError: togethercomputer/evo-1-131k-base does not appear to have a file named pytorch_model.bin, tf_model.h5, model.ckpt or flax_model.msgpack.

#39 jingliezhou closed 2 weeks ago
2
add links for colab and nitro bio wrapper

#38 exnx closed 3 months ago
0
Prompt for virus and plasmid generation

#37 apcamargo closed 2 weeks ago
1
Dose someone have idea about issues such as "'MHA' is not defined"?

#36 xmz111 closed 3 months ago
1
GPU memory usage

#35 WangLabTHU opened 3 months ago
1
Finetuning on a sequenceClassification task

#34 leannmlindsey opened 3 months ago
0
OpenGenome Dataset

#33 leannmlindsey closed 3 months ago
1
Extracting EVO representations rather than logits

#32 amoskalev opened 3 months ago
5
Modify generation function to return log probability per token for further sequence analysis

#31 AhmedKazlak opened 4 months ago
0
update readme with links to Together web UI

#30 exnx closed 3 months ago
1
Together web UI added to readme

#29 exnx closed 4 months ago
0
Release of OpenGenome

#28 KatarinaYuan closed 4 months ago
2
Training code availability?

#27 chaitjo closed 3 months ago
2
Running the model in a firewalled environment

#26 ernestmordret closed 4 months ago
3
switch from openai to together library for calling the API in hello_evo.ipynb

#25 athms closed 4 months ago
0
Max Seq length for inference

#24 JunboShen closed 2 weeks ago
5
AssertionError: rotary_emb is not installed

#23 bioone opened 4 months ago
3
Inquiry Regarding Local Model Usage and Importing Model Files

#22 yyly6 closed 3 months ago
2
fixing typos in hello Evo notebook

#21 exnx closed 4 months ago
1
Update README.md

#20 eltociear closed 4 months ago
1
adding hello evo ipynb

#19 athms closed 4 months ago
0
Demo application with Artificial?

#18 artificial-paul opened 4 months ago
0