Stockholm is a widely-used format for protein and nucleotide MSAs (largely due to its adoption by Pfam and Rfam). MSAs retrieved from InterPro are also provided in this format.
It would be handy if goalign supported the Stockholm files.
Hi,
Thank you for the suggestion.
I've made an initial attempt at parsing the Stockholm format, which can be accessed using the -k option.
If you try it out, feel free to let me know if you encounter any issues.
Stockholm is a widely-used format for protein and nucleotide MSAs (largely due to its adoption by Pfam and Rfam). MSAs retrieved from InterPro are also provided in this format.
It would be handy if
goalign
supported the Stockholm files.