Output list of taxon labels?

[tseemann]

I want to emulate nw_labels -I whicj prints each tip label (not internal nodes) labels one per line.

But I have looked many times over but can not see how to do this in gotree.

Hope you can point me in the right direction.

So ((A,B),C( woukld print

A
B
C

[fredericlemoine]

Hi,

Would gotree stats tips work? You should select the 4th column, and maybe remove the header : gotree stats tips -i <tree> | cut -f 4 | tail -n+2

[tseemann]

Yes, that does work, thank you.

I will use that in my script for now.

But I tjink listing all tap or internal labels is a standard/fundamental operation that deserves its own labels command perhaps.

[fredericlemoine]

I just added the "labels" command, it works like that:

$ echo "((Tip4,(Tip7,Tip2)),Tip0,((Tip8,(Tip9,Tip3)),((Tip6,Tip5),Tip1)));" | gotree labels
Tip4
Tip7
Tip2
Tip0
Tip8
Tip9
Tip3
Tip6
Tip5
Tip1