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evoldoers / machineboss

Bioinformatics Open Source Sequence machine
BSD 3-Clause "New" or "Revised" License
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Optimize advanceSort() #94

Closed ihh closed 6 years ago

ihh commented 6 years ago 
boss --generate-chars N \
 --concat --generate-one ACDEFGHIKLMNQRSTVWY \
 --concat --generate-one ST \
 --concat --generate-one ACDEFGHIKLMNQRSTVWY \
 --eliminate >PS00001.json

boss --counts -v6 \
 --generate-uniform-dna \
 --concat \
  --begin \
   PS00001.json --preset translate --double-strand \
   --concat --generate-uniform-dna \
   --count-copies n \
  --end \
 --accept-csv t/csv/nanopore_test.csv \
 --params data/Ecoli_codon.json