search

evolutionaryscale / esm

Other
1.26k stars 141 forks source link

multichain protein structure predicrion #134

Open InvincibleZZH opened 1 week ago

InvincibleZZH commented 1 week ago

How can i input 2 chains into ESM3 to predict structure? I tried ":" in the sequence like esm2, but returned an error

QuasiLegendre commented 1 week ago

see sequence_tokenizer.py

batch2k commented 19 hours ago

see sequence_tokenizer.py

Brief look into it suggests that there might be a way for multi-chain support, but can you provide an example where it works? I'm interested in multimeric structures like ion channels and protein/protein complexes

QuasiLegendre commented 41 minutes ago

I tried but I don't believe the "|" token actually works.