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evolvedmicrobe / beast-mcmc

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GNU Lesser General Public License v2.1
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BEAUti: only one taxa set for 3 unlinked partitions #374

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 

BEAUti Generates the wrong taxa set for the starting tree 
  <taxa idref="taxa"/> is for the full set. 
I unlinked all partitions, but beauti generated just one combined taxa set.
Consequently beast fails.

        <!-- No calibration                                                          -->
    <coalescentTree id="mt.nex.startingTree" rootHeight="0.076">
        <taxa idref="taxa"/>
        <constantSize idref="initialDemo"/>
    </coalescentTree>

    <!-- Generate a random starting tree under the coalescent process            -->

    <!-- No calibration                                                          -->
    <coalescentTree id="nuclear.nex.startingTree" rootHeight="0.7">
        <taxa idref="taxa"/>
        <constantSize idref="initialDemo"/>
    </coalescentTree>

    <!-- Generate a random starting tree under the coalescent process            -->

    <!-- No calibration                                                          -->
    <coalescentTree id="X.nex.startingTree" rootHeight="0.1">
        <taxa idref="taxa"/>
        <constantSize idref="initialDemo"/>
    </coalescentTree>

Original issue reported on code.google.com by jhe...@gmail.com on 24 Aug 2010 at 6:42

GoogleCodeExporter commented 9 years ago

Original comment by dong.w.xie@gmail.com on 25 Aug 2010 at 6:03

GoogleCodeExporter commented 9 years ago

Original comment by dong.w.xie@gmail.com on 25 Aug 2010 at 10:54