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evolvedmicrobe / beast-mcmc

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Add jitter option to continuous diffusion options in the BEAUti sites panel #740

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
RRWs with duplicated taxa traits require a some noise on the duplicated traits. 
This can be set using the jitter option in multivariateTraitLikelihood, which 
requires setting window sizes for each dimension of trait from which the noise 
will be drawn. A feature that automagically detect duplicated traits, and 
already selects that option in case of RRWs would be great plus

Original issue reported on code.google.com by philippe...@gmail.com on 15 Jul 2014 at 9:32

GoogleCodeExporter commented 9 years ago 
In BEAUti can we assume a symmetrical noise distribution (a multivariate normal 
with a given stdev)?

Original comment by ramb...@gmail.com on 5 Aug 2014 at 1:49

GoogleCodeExporter commented 9 years ago 
Sure, that seems like a reasonable way to add noise

Original comment by philippe...@gmail.com on 5 Aug 2014 at 2:02

GoogleCodeExporter commented 9 years ago

Original comment by ramb...@gmail.com on 5 Aug 2014 at 2:18