Add SPL expression (and tree?)

evoreprice / lmdPaper

Code to generate the manuscript, figures and data for "Gene expression profiling of reproductive meristem types in early rice inflorescences by laser microdissection" (2016)

http://dx.doi.org/10.1111/tpj.13147

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Add SPL expression (and tree?) #17

Closed TomHarrop closed 8 years ago

TomHarrop commented 9 years ago

Check expression of SPL genes to verify GSEA figure (prominent expression in N2)

Plot exressed genes vs tree? Tree & heatmap? Other ideas?

TomHarrop commented 9 years ago

Also look into microRNAs that regulate / interact with SPLs. See stefan's comments from 13/10/15: miR529 seems to be the real regulator rather than miR156 (jeong et al 2012)

TomHarrop commented 8 years ago

At least need to refer to new paper in PNAS about SPL14 and SPL17 www.pnas.org/cgi/doi/10.1073/pnas.1521949112