evotools / hapbin

Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
GNU General Public License v3.0
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Add the zero-indexed SNP Index to IHS and XPEHH output. #50

Closed camaclean closed 6 years ago

camaclean commented 6 years ago

Allow easy lookup of data in the map files by providing the zero-indexed line location of the snp. See bug #49.

npch commented 6 years ago

@prenderj can you review this?

camaclean commented 6 years ago

Could we get this merged, and perhaps push a v1.4 tag?

npch commented 6 years ago

I've merged this, but I'll hold off pushing the v1.4 tag until @prenderj has had a chance to review, given that this changes the output format.