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evotools
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nf-LO
A Nextflow workflow to generate lift over files for any pair of genomes
https://nf-lo.readthedocs.io/
MIT License
54
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Add VCF output
#25
RenzoTale88
opened
2 months ago
0
Support haplotype-resolved liftovers
#24
RenzoTale88
closed
2 months ago
0
chainnet file empty
#23
MartinSchmitz95
closed
2 months ago
11
Issue regarding 'nextflow run evotools/nf-LO'
#22
Heather1999
closed
5 months ago
2
A problem while using nf-LO
#21
GrazieT
closed
8 months ago
1
Issue about Annotation
#20
GrazieT
closed
9 months ago
2
grouptgt error
#19
guandailu
closed
10 months ago
1
Fine tune memory
#18
RenzoTale88
closed
5 months ago
0
pin miniconda image and add missing dependency
#17
bunop
closed
1 year ago
1
cannot build singularity/docker images with the current continuumio/miniconda3 image
#16
bunop
closed
1 year ago
0
minimap2: Stdin is empty
#15
vpeddu
closed
4 months ago
16
having trouble installing nf-lo manually
#14
reekilynn
closed
1 year ago
1
liftover failed with cross map
#13
udiland
closed
1 year ago
7
error exit status (255)
#12
udiland
closed
1 year ago
4
ALIGNER:chainMerge (chainmerge) FAILED
#11
shwetaramdas
closed
1 year ago
7
Failed in ALIGNER:lastz
#10
Fuyt27
closed
1 year ago
1
How to merge chain file from different chromosome
#9
zhoudreames
closed
1 year ago
2
Having trouble in test nf-LO using conda
#8
Fuyt27
closed
1 year ago
3
environment.yml error even while running via docker
#7
sangeet2019
closed
2 years ago
6
pipeline commands
#6
marcovth
closed
2 years ago
1
Minimap2 and gsalign using too few cpus
#5
andersgs
closed
2 years ago
2
The current r-environment.yml never resolves
#4
andersgs
closed
2 years ago
7
Process `ALIGNER:chainMerge (chainmerge)` terminated with an error exit status (1) -- Execution is retried (1)
#3
zhoudreames
closed
2 years ago
19
Too large of a bash script for slurm in chainMerge
#2
mchaisso
closed
2 years ago
3
Process requirement exceed available CPUs -- req: 2; avail: 1
#1
smk5g5
closed
2 years ago
9