This supports a feature request for annotating human MT, the mitochondrial chromosome (#224). MT can now be displayed in the human genome.
In the whole-genome view, MT is shown only as a label. This is due to its extremely small size relative to nuclear chromosomes. Users can now also click on this chromosome label to toggle single-chromosome view. In that view, MT is shown as a grey line, which contains any features that have been annotated.
Example configuration:
var config = {
organism: 'human',
showNonNuclearChromosomes: true,
annotations: [{
name: 'ND1',
chr: 'MT',
start: 3307,
stop: 4262
}]
};
var ideogram = new Ideogram(config);
More work is needed to enable the broader user story. For example, there is no way to indicate an MT gene in the whole-genome view. General enhancements to enable that are coming soon.
This supports a feature request for annotating human MT, the mitochondrial chromosome (#224). MT can now be displayed in the human genome.
In the whole-genome view, MT is shown only as a label. This is due to its extremely small size relative to nuclear chromosomes. Users can now also click on this chromosome label to toggle single-chromosome view. In that view, MT is shown as a grey line, which contains any features that have been annotated.
Example configuration:
More work is needed to enable the broader user story. For example, there is no way to indicate an MT gene in the whole-genome view. General enhancements to enable that are coming soon.