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eweitz / ideogram

Chromosome visualization for the web
https://eweitz.github.io/ideogram
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Enable related genes kit to show all genes in pathway #297

Closed eweitz closed 2 years ago

eweitz commented 2 years ago

This lets users click the pathway link in a related genes tooltip, then see all genes in that pathway.

Colors in this "pathway" view map to detailed interaction type. For example, when viewing RAD51L in the "Integrated breast cancer pathway", BRCA2 and RAD51 are colored green, because they have a stimulation interaction with RAD51L. Genes that do not directly interact with the searched gene, or that lack a detailed interaction type with it, are colored grey.

Here's how it looks:

https://user-images.githubusercontent.com/1334561/159692143-80d74d2b-7977-4883-ada8-50af84d5d404.mov

Future work will refine the legend and other aspects of this view.

coveralls commented 2 years ago

Coverage Status

Coverage decreased (-1.8%) to 86.794% when pulling 8364274f8058b0f7d8a211f1fc7bd12a7f0b892f on genes-in-pathway into 1c2923df02ab1bbc618ae66b88b45cf17cac23bb on master.