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eweitz / ideogram

Chromosome visualization for the web
https://eweitz.github.io/ideogram
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Show paralog neighborhoods #303

Closed eweitz closed 2 years ago

eweitz commented 2 years ago

This enables showing "paralog neighborhoods", paralogs near each other in the genome. These are often otherwise hidden.

The related genes kit now groups paralogs that are within 2 mega-basepairs (2 Mbp) of each other, and displays them with an overlay annotation. Clicking a paralog in the resulting tooltip searches it.

Here's how it looks:

https://user-images.githubusercontent.com/1334561/170846733-2aeb192a-7f73-445b-a28a-c8250774b198.mov

coveralls commented 2 years ago

Coverage Status

Coverage decreased (-0.4%) to 87.404% when pulling 3d5c4cb56f318fe6bc8082e28c18a81128112cbb on paralog-neighborhoods into 6608cc7a9dbe51087ae0ae6c63434ebddb83e49c on master.