Histogram support for bedgraph format

eweitz / ideogram

Chromosome visualization for the web

https://eweitz.github.io/ideogram

Other

288 stars 72 forks source link

Histogram support for bedgraph format #317

Open stephenshank opened 2 years ago

stephenshank commented 2 years ago

Thanks for your work on this wonderful project! I am wondering if it is possible to support the bedgraph format on the histogram, or if there is any interest in doing so. At the moment it seems that only annotation JSONs are supported. I am interested in using this as a viewer for ChIP-seq peaks where the former format makes more sense.

eweitz commented 2 years ago

Interesting proposal! Could you provide some sample data?

stephenshank commented 1 year ago

Thank you for such a prompt and positive response! Some data can be found here: https://galaxy.hyphy.org/api/datasets/889b3527af72ff94/display?to_ext=bedgraph

It's from this history and was generated with the bamCoverage tool on reads mapped to hg19 with BWA on an accession from this study with a 10kb window.