Open thedam opened 1 year ago
Interesting proposal, @thedam! What are some example use cases?
Well, for example marking ROH regions.The overlaid red regions indicate a ROH region in a sample. The histogram bars indicate how many samples have ROH in this region - and with a quick look we'd see if this ROH region is frequent.
(actually the histogram doesn't show what I wanted; ideogram seems to pile up bars, that are closer than 10k nt. But is it close to my vision).
In my case I wanted to build histogram based on such a bed file:
1 189392 494542 1 (this region is covered by 1 sample, so I'd like to see a mark/bar)
1 494542 494609 2 (this region is covered by 3 samples, so I'd like to see a mark/bar x3 bigger)
1 494609 611317 3
1 611317 872843 5
1 872843 873251 13 (this region is covered by 13 samples, so the mark/bar i 13x bigger)
1 873251 873542 54
I'd be happy with such feature :)
Hey, is it possible to combine two types of the annotations? it would be helpful to draw this: https://eweitz.github.io/ideogram/annotations-overlaid and this: https://eweitz.github.io/ideogram/annotations-histogram on the same picture
to make it more or less like this:
Thanks for any hints:)