Adding Poplar assembly

[StantonMartin]

Hi, I would love to use this with the Poplar genome. Adding into metadata. Hoping this works as I don't know how to build and test locally...

[eweitz]

Thank you, Stanton! This is a helpful, tidy contribution. What name and email should I add to AUTHORS?

For reference, you should be able to load NCBI's representative chromosome-level genome assembly for a given organism by simply specifying its scientific name in the organism configuration property for Ideogram. Example: https://codepen.io/eweitz/pen/VwEmNpa.

[StantonMartin]

Hi Eric,

Name is: Stanton Martin

Email: @.**@.>

I am looking in your code for the place where you read the json files... I would like to connect it to our postgres database through a php mid tier layer. So I am hoping there is a way to pick up a data stream formatted as an in memory json array (in javascript) and process that with ideogram without actually writing it to disk.

I am pretty sure this is possible, but wasn't able to find the right hook at first glance...

Thanks,

Stan

From: Eric Weitz @.> Sent: Friday, April 21, 2023 6:32 AM To: eweitz/ideogram @.> Cc: Martin, Stanton @.>; Author @.> Subject: [EXTERNAL] Re: [eweitz/ideogram] Adding Poplar assembly (PR #346)

Thank you, Stanton! This is a helpful, tidy contribution. What name and email should I add to AUTHORShttps://github.com/eweitz/ideogram/blob/master/AUTHORS?

For reference, you should be able to load NCBI's representative chromosome-level genome assembly for a given organism by simply specifying its scientific name in the organism configuration property for Ideogram. Example: https://codepen.io/eweitz/pen/VwEmNpa.

- Reply to this email directly, view it on GitHubhttps://github.com/eweitz/ideogram/pull/346#issuecomment-1517624914, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AO4B7EPCLCSX4JYV3VEYJ73XCJO27ANCNFSM6AAAAAAXGKDCJI. You are receiving this because you authored the thread.Message ID: @.**@.>>