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ewels / clusterflow

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
https://ewels.github.io/clusterflow/
GNU General Public License v3.0
97 stars 27 forks source link

Geopts #11

Closed stu2 closed 9 years ago

stu2 commented 9 years ago

Hi Phil. No problem, pull request to merge with v0.4devel this time. Cheers

ewels commented 9 years ago

Yup, this all looks great :+1:

For reference, the changes involving the qsub commands (adding the queue name and changing the memory type) could have been achieved by specifying a @custom_job_submit_command in your clusterflow.config file. However, the integration that you have introduced is deeper and nicer (just more work!).

I'll merge shortly and then try testing it on our GRIDEngine system to see if it still works - the ultimate test!

Thanks again,

Phil