Create salmon.cfmod.pl - Githubissues

ewels / clusterflow

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

https://ewels.github.io/clusterflow/

GNU General Public License v3.0

97 stars 27 forks source link

Closed darogan closed 7 years ago

darogan commented 7 years ago

I messed up something in my last PR, so I'm trying again

Sorry about that

darogan commented 7 years ago

@ewels I don't understand the test failing here. Running perl source/CF/cf_tests.pl locally doesn't produce any errors for me.

ewels commented 7 years ago

Hi @darogan,

I just pulled your changes and got the same error. Running the command manually gives this error:

-bash: /Users/philewels/GitHub/Cluster_Flow/clusterflow/source/CF/../../modules/salmon.cfmod.pl: Permission denied

So just chmod the file to make it executable and everything should work I think. Let me know if you have difficulties and I can do it.

Phil

ewels commented 7 years ago

Hi @darogan,

I'll merge and make this change myself 😄

Thanks again!

Phil

ewels commented 7 years ago

Checks passing with flying colours now! 🌈 🦄

darogan commented 7 years ago

Thanks @ewels. I had forgotten to do this - glad you sorted the permissions!

ewels commented 7 years ago

No problem! Thanks for writing the module :)