Fixes for #124 and #125

ewels / clusterflow

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

https://ewels.github.io/clusterflow/

GNU General Public License v3.0

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Fixes for #124 and #125 #126

Closed s-andrews closed 5 years ago

s-andrews commented 5 years ago

This should add Lmod support and fix a bug in custom SLURM submit commands.

s-andrews commented 5 years ago

The CI checks failed for this, but it's all in Helpers.py which I didn't change!

ewels commented 5 years ago

Ah man, all this Python stuff - I'd totally forgotten that I'd written this!

ewels commented 5 years ago

Ok, so this is because the PyFlakes package that checks Python code has updated and now produces this warning. Should be an easy fix, will push it now.

ewels commented 5 years ago

Fix pushed, restarted the travis job 👍

ewels commented 5 years ago

All looking good! If you fancy adding something to the changelog and documentation too then that would be fab..