warning about no "bowtie2 path defined" when you're not using a genome

ewels / clusterflow

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

https://ewels.github.io/clusterflow/

GNU General Public License v3.0

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warning about no "bowtie2 path defined" when you're not using a genome #16

Closed ewels closed 9 years ago

ewels commented 9 years ago

There's a spurious warning about not having a bowtie2 path defined when you're not using a genome. This is from L549 in cf where the test is a simple else but should either be removed all together, or should be changed to elsif (defined ($GENOME))

ewels commented 9 years ago

Can't find this bug in the code. Closing.