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ewels / clusterflow

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
https://ewels.github.io/clusterflow/
GNU General Public License v3.0
97 stars 27 forks source link

Simplify command line flags #36

Closed ewels closed 9 years ago

ewels commented 9 years ago

There are now quite a lot of command line flags, and many can be simplified.

For instance, does --list_pipelines really need to be --list_pipelines or can it just be --pipelines? Also see if any others can be moved into config files.

ewels commented 9 years ago

Removed --verbose and --print_versions as their functionality is now always done by default.

ewels commented 9 years ago

It'd be nice to leave in aliases for --list_pipelines and so on, I keep typing these by accident.

ewels commented 9 years ago

Meh, I got over it.