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ewels / clusterflow

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
https://ewels.github.io/clusterflow/
GNU General Public License v3.0
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Write UPPMAX-specific install wizard #43

Closed ewels closed 9 years ago

ewels commented 9 years ago

Write a config wizard script for UPPMAX users which asks for project ID and other site specific things.

Alias this in as an extra command line flag as part of the module system perhaps? eg.:

alias 'cf --uppmax'='/usr/bin/modules/clusterflow/custom/uppmax_wizard.pl'
ewels commented 9 years ago

Now writing scripts in the new clusterflow-uppmax repository. This is cloned into <clusterflow_install_dir>/scripts/, which is ignored in the main clusterflow .gitignore file.

Has an executable called cf-uppmax with comparable flags as described above, so cf-uppmax --add_genome works to install iGenome references and so on.

ewels commented 9 years ago

Completed with https://github.com/ewels/clusterflow-uppmax/commit/4fdb4e28cb196ff3b26f96f4445f7947138b83f1