Closed ewels closed 9 years ago
Could be cool to write a summary module for methylation data using methylkit (see docs).
Especially nice would be the sample correlation plot and the clustering.
Maybe this would be a candidate for the first Cluster Flow module written in R?
Why R? Made a start.. https://github.com/ewels/clusterflow/commit/9ce3e6691a10f10cff4d4fd4a422daad67df0202
Found methylkit to be incredibly slow. Also it only reads SAM files so took an extra BAM -> SAM conversion step. Gave up waiting after quite a long time, writing my own package instead.
Could be cool to write a summary module for methylation data using methylkit (see docs).
Especially nice would be the sample correlation plot and the clustering.
Maybe this would be a candidate for the first Cluster Flow module written in R?