Open ewels opened 9 years ago
RSeQC needs yet another reference type: a 12-column tab separated, BED plain text file to represent gene models.
Script to convert gtf to BED12 here: https://code.google.com/p/ea-utils/source/browse/trunk/clipper/gtf2bed
Module for RSeQC perhaps?
Edit: This probably isn't a single module, rather a group of several:
junctions_annotation.py
andjunction_saturation.py
together in one module)