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ewels / clusterflow

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
https://ewels.github.io/clusterflow/
GNU General Public License v3.0
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RSeQC #51

Open ewels opened 9 years ago

ewels commented 9 years ago

Module for RSeQC perhaps?

Edit: This probably isn't a single module, rather a group of several:

ewels commented 9 years ago

RSeQC needs yet another reference type: a 12-column tab separated, BED plain text file to represent gene models.

Example here and some downloads here

ewels commented 9 years ago

Script to convert gtf to BED12 here: https://code.google.com/p/ea-utils/source/browse/trunk/clipper/gtf2bed