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ewels / sra-explorer

Web application to explore the Sequence Read Archive.
https://sra-explorer.info/
GNU General Public License v2.0
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Accessions with SRA download but no fastq download #21

Closed vpeddu closed 4 years ago

vpeddu commented 4 years ago

Found a few accessions like SRR11945694 that have a valid SRA download command but the fastq download command hangs at loading. Is this because fastqs aren't readily available?

ewels commented 4 years ago

Yup, if you look at the EBI API results for this accession you can see that there are no FastQ fiels available: https://www.ebi.ac.uk/ena/data/warehouse/filereport?result=read_run&fields=fastq_ftp&accession=SRR11945694

fastq_ftp

You can also see that the FastQ table cells are blank on the web page: https://www.ebi.ac.uk/ena/data/view/SRR11945694

I have an issue open to warn when this is the case (https://github.com/ewels/sra-explorer/issues/7), but I haven't yet found time to implement it sorry.

Phil