Open melissawm opened 2 months ago
melissawm
commented
2 months ago I believe me and @agriyakhetarpal have pinpointed this to the MathJax distribution being hardcoded in MyST-NB. Since SciPy (the target project for these changes) uses a custom MathJax package, MyST-NB does not find it and can't render the math nodes.
Would it be acceptable to propose a feature to customize the MathJax distribution used by MyST-NB?
Thanks!
agriyakhetarpal
commented
1 month ago It is to be noted that this issue, when a custom MathJax distribution is used, is fixed[^1] by adding the following line in conf.py:
myst_update_mathjax = FalseI hope this is helpful towards isolating the cause of the bug and narrowing it down to a specific configuration value. We would be happy to make a contribution to MyST-NB by proposing this as a feature, as mentioned by @melissawm above.
xref: https://github.com/scipy/scipy/pull/20518
[^1]: This is as noted in https://myst-parser.readthedocs.io/en/latest/syntax/optional.html#mathjax-and-math-parsing
Describe the bug
context I am using MyST-NB to write some of the SciPy documentation pages in Markdown and execute them as notebooks.
When I use the
{math}role for displaying math, everything works as expected. Using thedollarmathmyst extension, however, results in\(syntax showing in the displayed html file, instead of the dollar signs. The generated .ipynb file correctly displays dollar signs for math.I have experimented with
but it doesn't change anything for this case.
expectation I expected math expressions to be correctly rendered as math in the html output.
bug But instead I see the following output: (note, for example,
\(F^{-1}\))As I mentioned, the generated notebook is correct:
problem This is a problem because I'd like the notebooks to be downloadable, and having dollar sign syntax instead of the
{math}role syntax is more user-friendly in that case.Reproduce the bug
I know this is not the best reproducible set up but I can point to a branch where I have this set up: https://github.com/scipy/scipy/pull/20303
And the corresponding output: https://output.circle-artifacts.com/output/job/f515f0f8-09d2-495c-a5bc-782826ff51e8/artifacts/0/html/tutorial/stats/sampling.html
List your environment
Full environment
``` List of packages in environment: "/home/melissa/micromamba/envs/scipy-dev" Name Version Build Channel ─────────────────────────────────────────────────────────────────────────────────── _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge accessible-pygments 0.0.4 pyhd8ed1ab_0 conda-forge alabaster 0.7.16 pyhd8ed1ab_0 conda-forge alsa-lib 1.2.11 hd590300_1 conda-forge anyio 4.3.0 pyhd8ed1ab_0 conda-forge argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py311h459d7ec_4 conda-forge array-api-strict 1.1.1 pyhd8ed1ab_0 conda-forge arrow 1.3.0 pyhd8ed1ab_0 conda-forge asttokens 2.4.1 pyhd8ed1ab_0 conda-forge asv 0.6.3 py311hb755f60_0 conda-forge asv_runner 0.2.1 pyhd8ed1ab_0 conda-forge attr 2.5.1 h166bdaf_1 conda-forge attrs 23.2.0 pyh71513ae_0 conda-forge babel 2.14.0 pyhd8ed1ab_0 conda-forge backports.zoneinfo 0.2.1 py311h38be061_8 conda-forge beautifulsoup4 4.12.3 pyha770c72_0 conda-forge beniget 0.4.1 pyhd8ed1ab_0 conda-forge binutils 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