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executablebooks / cookiecutter-jupyter-book

Cookiecutter template for a simple jupyter book
https://executablebooks.github.io/cookiecutter-jupyter-book/
BSD 3-Clause "New" or "Revised" License
142 stars 55 forks source link

The `deploy-book` action doesn't work out-of-the-box #47

Open jpivarski opened 3 months ago

jpivarski commented 3 months ago

Describe the bug

With a new installation, the deploy-book action can't find the _build/html directory. I haven't looked into it, but I think it's just pointing to the wrong path. (Building the book works fine offline.)

https://github.com/hsf-training/deep-learning-intro-for-hep/actions/runs/10373712852/job/28719469125

Copy of output, in case the above gets deleted:

2024-08-13T16:38:38.1346533Z Current runner version: '2.319.0'
2024-08-13T16:38:38.1370918Z ##[group]Operating System
2024-08-13T16:38:38.1371556Z Ubuntu
2024-08-13T16:38:38.1371937Z 22.04.4
2024-08-13T16:38:38.1372353Z LTS
2024-08-13T16:38:38.1372704Z ##[endgroup]
2024-08-13T16:38:38.1373077Z ##[group]Runner Image
2024-08-13T16:38:38.1373540Z Image: ubuntu-22.04
2024-08-13T16:38:38.1373964Z Version: 20240811.1.0
2024-08-13T16:38:38.1374942Z Included Software: https://github.com/actions/runner-images/blob/ubuntu22/20240811.1/images/ubuntu/Ubuntu2204-Readme.md
2024-08-13T16:38:38.1376416Z Image Release: https://github.com/actions/runner-images/releases/tag/ubuntu22%2F20240811.1
2024-08-13T16:38:38.1377283Z ##[endgroup]
2024-08-13T16:38:38.1377666Z ##[group]Runner Image Provisioner
2024-08-13T16:38:38.1378164Z 2.0.374.1
2024-08-13T16:38:38.1378510Z ##[endgroup]
2024-08-13T16:38:38.1392852Z ##[group]GITHUB_TOKEN Permissions
2024-08-13T16:38:38.1394465Z Metadata: read
2024-08-13T16:38:38.1395033Z Pages: write
2024-08-13T16:38:38.1395574Z ##[endgroup]
2024-08-13T16:38:38.1398787Z Secret source: Actions
2024-08-13T16:38:38.1399382Z Prepare workflow directory
2024-08-13T16:38:38.2372351Z Prepare all required actions
2024-08-13T16:38:38.2528525Z Getting action download info
2024-08-13T16:38:38.4979071Z Download action repository 'actions/checkout@v3' (SHA:f43a0e5ff2bd294095638e18286ca9a3d1956744)
2024-08-13T16:38:38.6236117Z Download action repository 'actions/setup-python@v4' (SHA:65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236)
2024-08-13T16:38:38.6924315Z Download action repository 'actions/upload-pages-artifact@v2' (SHA:a753861a5debcf57bf8b404356158c8e1e33150c)
2024-08-13T16:38:39.1155041Z Download action repository 'actions/deploy-pages@v2' (SHA:de14547edc9944350dc0481aa5b7afb08e75f254)
2024-08-13T16:38:39.8008205Z Getting action download info
2024-08-13T16:38:39.9378618Z Download action repository 'actions/upload-artifact@v3' (SHA:a8a3f3ad30e3422c9c7b888a15615d19a852ae32)
2024-08-13T16:38:39.9787697Z Complete job name: deploy-book
2024-08-13T16:38:40.0612409Z ##[group]Run actions/checkout@v3
2024-08-13T16:38:40.0612898Z with:
2024-08-13T16:38:40.0613283Z   repository: hsf-training/deep-learning-intro-for-hep
2024-08-13T16:38:40.0614115Z   token: ***
2024-08-13T16:38:40.0614481Z   ssh-strict: true
2024-08-13T16:38:40.0614801Z   persist-credentials: true
2024-08-13T16:38:40.0615299Z   clean: true
2024-08-13T16:38:40.0615656Z   sparse-checkout-cone-mode: true
2024-08-13T16:38:40.0616030Z   fetch-depth: 1
2024-08-13T16:38:40.0616489Z   fetch-tags: false
2024-08-13T16:38:40.0616819Z   lfs: false
2024-08-13T16:38:40.0617093Z   submodules: false
2024-08-13T16:38:40.0617532Z   set-safe-directory: true
2024-08-13T16:38:40.0617891Z env:
2024-08-13T16:38:40.0618208Z   BASE_URL: /deep-learning-intro-for-hep
2024-08-13T16:38:40.0618712Z ##[endgroup]
2024-08-13T16:38:40.3170882Z Syncing repository: hsf-training/deep-learning-intro-for-hep
2024-08-13T16:38:40.3172764Z ##[group]Getting Git version info
2024-08-13T16:38:40.3173976Z Working directory is '/home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep'
2024-08-13T16:38:40.3175222Z [command]/usr/bin/git version
2024-08-13T16:38:40.3236261Z git version 2.46.0
2024-08-13T16:38:40.3263438Z ##[endgroup]
2024-08-13T16:38:40.3282805Z Temporarily overriding HOME='/home/runner/work/_temp/9ec590b7-70bf-4baf-816e-4f213e988237' before making global git config changes
2024-08-13T16:38:40.3284352Z Adding repository directory to the temporary git global config as a safe directory
2024-08-13T16:38:40.3286895Z [command]/usr/bin/git config --global --add safe.directory /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep
2024-08-13T16:38:40.3327638Z Deleting the contents of '/home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep'
2024-08-13T16:38:40.3330833Z ##[group]Initializing the repository
2024-08-13T16:38:40.3334028Z [command]/usr/bin/git init /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep
2024-08-13T16:38:40.3419139Z hint: Using 'master' as the name for the initial branch. This default branch name
2024-08-13T16:38:40.3421045Z hint: is subject to change. To configure the initial branch name to use in all
2024-08-13T16:38:40.3422355Z hint: of your new repositories, which will suppress this warning, call:
2024-08-13T16:38:40.3423174Z hint:
2024-08-13T16:38:40.3423762Z hint:  git config --global init.defaultBranch <name>
2024-08-13T16:38:40.3424275Z hint:
2024-08-13T16:38:40.3424811Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
2024-08-13T16:38:40.3425694Z hint: 'development'. The just-created branch can be renamed via this command:
2024-08-13T16:38:40.3426576Z hint:
2024-08-13T16:38:40.3427265Z hint:  git branch -m <name>
2024-08-13T16:38:40.3428836Z Initialized empty Git repository in /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/.git/
2024-08-13T16:38:40.3440072Z [command]/usr/bin/git remote add origin https://github.com/hsf-training/deep-learning-intro-for-hep
2024-08-13T16:38:40.3475132Z ##[endgroup]
2024-08-13T16:38:40.3476495Z ##[group]Disabling automatic garbage collection
2024-08-13T16:38:40.3479929Z [command]/usr/bin/git config --local gc.auto 0
2024-08-13T16:38:40.3511346Z ##[endgroup]
2024-08-13T16:38:40.3512078Z ##[group]Setting up auth
2024-08-13T16:38:40.3516481Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2024-08-13T16:38:40.3543797Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
2024-08-13T16:38:40.3915168Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2024-08-13T16:38:40.3944757Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
2024-08-13T16:38:40.4190338Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic ***
2024-08-13T16:38:40.4224052Z ##[endgroup]
2024-08-13T16:38:40.4225114Z ##[group]Fetching the repository
2024-08-13T16:38:40.4233242Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +e7594499512a056a4d9098ca742fa167245df07e:refs/remotes/origin/main
2024-08-13T16:38:40.7722662Z remote: Enumerating objects: 20, done.        
2024-08-13T16:38:40.7724443Z remote: Counting objects:   5% (1/20)        
2024-08-13T16:38:40.7725589Z remote: Counting objects:  10% (2/20)        
2024-08-13T16:38:40.7726522Z remote: Counting objects:  15% (3/20)        
2024-08-13T16:38:40.7727540Z remote: Counting objects:  20% (4/20)        
2024-08-13T16:38:40.7728371Z remote: Counting objects:  25% (5/20)        
2024-08-13T16:38:40.7728984Z remote: Counting objects:  30% (6/20)        
2024-08-13T16:38:40.7729664Z remote: Counting objects:  35% (7/20)        
2024-08-13T16:38:40.7730171Z remote: Counting objects:  40% (8/20)        
2024-08-13T16:38:40.7730753Z remote: Counting objects:  45% (9/20)        
2024-08-13T16:38:40.7731428Z remote: Counting objects:  50% (10/20)        
2024-08-13T16:38:40.7732008Z remote: Counting objects:  55% (11/20)        
2024-08-13T16:38:40.7732539Z remote: Counting objects:  60% (12/20)        
2024-08-13T16:38:40.7733186Z remote: Counting objects:  65% (13/20)        
2024-08-13T16:38:40.7733781Z remote: Counting objects:  70% (14/20)        
2024-08-13T16:38:40.7734276Z remote: Counting objects:  75% (15/20)        
2024-08-13T16:38:40.7734939Z remote: Counting objects:  80% (16/20)        
2024-08-13T16:38:40.7735512Z remote: Counting objects:  85% (17/20)        
2024-08-13T16:38:40.7735980Z remote: Counting objects:  90% (18/20)        
2024-08-13T16:38:40.7736674Z remote: Counting objects:  95% (19/20)        
2024-08-13T16:38:40.7737251Z remote: Counting objects: 100% (20/20)        
2024-08-13T16:38:40.7737818Z remote: Counting objects: 100% (20/20), done.        
2024-08-13T16:38:40.7738871Z remote: Compressing objects:   5% (1/17)        
2024-08-13T16:38:40.7739439Z remote: Compressing objects:  11% (2/17)        
2024-08-13T16:38:40.7740000Z remote: Compressing objects:  17% (3/17)        
2024-08-13T16:38:40.7740691Z remote: Compressing objects:  23% (4/17)        
2024-08-13T16:38:40.7741237Z remote: Compressing objects:  29% (5/17)        
2024-08-13T16:38:40.7741739Z remote: Compressing objects:  35% (6/17)        
2024-08-13T16:38:40.7742448Z remote: Compressing objects:  41% (7/17)        
2024-08-13T16:38:40.7743021Z remote: Compressing objects:  47% (8/17)        
2024-08-13T16:38:40.7743585Z remote: Compressing objects:  52% (9/17)        
2024-08-13T16:38:40.7744213Z remote: Compressing objects:  58% (10/17)        
2024-08-13T16:38:40.7744790Z remote: Compressing objects:  64% (11/17)        
2024-08-13T16:38:40.7745513Z remote: Compressing objects:  70% (12/17)        
2024-08-13T16:38:40.7746252Z remote: Compressing objects:  76% (13/17)        
2024-08-13T16:38:40.7746788Z remote: Compressing objects:  82% (14/17)        
2024-08-13T16:38:40.7747295Z remote: Compressing objects:  88% (15/17)        
2024-08-13T16:38:40.7748003Z remote: Compressing objects:  94% (16/17)        
2024-08-13T16:38:40.7748593Z remote: Compressing objects: 100% (17/17)        
2024-08-13T16:38:40.7749124Z remote: Compressing objects: 100% (17/17), done.        
2024-08-13T16:38:40.7900846Z remote: Total 20 (delta 0), reused 19 (delta 0), pack-reused 0 (from 0)        
2024-08-13T16:38:40.7964287Z From https://github.com/hsf-training/deep-learning-intro-for-hep
2024-08-13T16:38:40.7965452Z  * [new ref]         e7594499512a056a4d9098ca742fa167245df07e -> origin/main
2024-08-13T16:38:40.7997045Z ##[endgroup]
2024-08-13T16:38:40.7997974Z ##[group]Determining the checkout info
2024-08-13T16:38:40.7999464Z ##[endgroup]
2024-08-13T16:38:40.8000340Z ##[group]Checking out the ref
2024-08-13T16:38:40.8004967Z [command]/usr/bin/git checkout --progress --force -B main refs/remotes/origin/main
2024-08-13T16:38:40.8056755Z Switched to a new branch 'main'
2024-08-13T16:38:40.8060205Z branch 'main' set up to track 'origin/main'.
2024-08-13T16:38:40.8066672Z ##[endgroup]
2024-08-13T16:38:40.8099787Z [command]/usr/bin/git log -1 --format='%H'
2024-08-13T16:38:40.8121981Z 'e7594499512a056a4d9098ca742fa167245df07e'
2024-08-13T16:38:40.8426040Z ##[group]Run actions/setup-python@v4
2024-08-13T16:38:40.8426703Z with:
2024-08-13T16:38:40.8427043Z   python-version: 3.11
2024-08-13T16:38:40.8427387Z   check-latest: false
2024-08-13T16:38:40.8428005Z   token: ***
2024-08-13T16:38:40.8428359Z   update-environment: true
2024-08-13T16:38:40.8428709Z   allow-prereleases: false
2024-08-13T16:38:40.8429167Z env:
2024-08-13T16:38:40.8429504Z   BASE_URL: /deep-learning-intro-for-hep
2024-08-13T16:38:40.8429891Z ##[endgroup]
2024-08-13T16:38:40.9648249Z ##[group]Installed versions
2024-08-13T16:38:40.9709319Z Successfully set up CPython (3.11.9)
2024-08-13T16:38:40.9710672Z ##[endgroup]
2024-08-13T16:38:40.9832425Z ##[group]Run pip install -r requirements.txt
2024-08-13T16:38:40.9832998Z pip install -r requirements.txt
2024-08-13T16:38:41.0086126Z shell: /usr/bin/bash -e {0}
2024-08-13T16:38:41.0086605Z env:
2024-08-13T16:38:41.0087193Z   BASE_URL: /deep-learning-intro-for-hep
2024-08-13T16:38:41.0087823Z   pythonLocation: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:38:41.0088557Z   PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.11.9/x64/lib/pkgconfig
2024-08-13T16:38:41.0089329Z   Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:38:41.0089912Z   Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:38:41.0090590Z   Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:38:41.0091183Z   LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.11.9/x64/lib
2024-08-13T16:38:41.0091701Z ##[endgroup]
2024-08-13T16:38:46.8582099Z Collecting jupyter-book (from -r requirements.txt (line 1))
2024-08-13T16:38:46.8713920Z   Downloading jupyter_book-1.0.2-py3-none-any.whl.metadata (5.8 kB)
2024-08-13T16:38:47.0150940Z Collecting matplotlib (from -r requirements.txt (line 2))
2024-08-13T16:38:47.0185111Z   Downloading matplotlib-3.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB)
2024-08-13T16:38:47.1885624Z Collecting numpy (from -r requirements.txt (line 3))
2024-08-13T16:38:47.1917619Z   Downloading numpy-2.0.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
2024-08-13T16:38:47.2173046Z Collecting ghp-import (from -r requirements.txt (line 4))
2024-08-13T16:38:47.2204886Z   Downloading ghp_import-2.1.0-py3-none-any.whl.metadata (7.2 kB)
2024-08-13T16:38:47.2461092Z Collecting click<9,>=7.1 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.2495339Z   Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
2024-08-13T16:38:47.2696808Z Collecting Jinja2 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.2738413Z   Downloading jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
2024-08-13T16:38:47.3064434Z Collecting jsonschema<5 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.3124295Z   Downloading jsonschema-4.23.0-py3-none-any.whl.metadata (7.9 kB)
2024-08-13T16:38:47.3289982Z Collecting linkify-it-py<3,>=2 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.3317882Z   Downloading linkify_it_py-2.0.3-py3-none-any.whl.metadata (8.5 kB)
2024-08-13T16:38:47.4158917Z Collecting myst-nb<3,>=1 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.4188911Z   Downloading myst_nb-1.1.1-py3-none-any.whl.metadata (4.7 kB)
2024-08-13T16:38:47.4504418Z Collecting myst-parser<3,>=1 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.4534802Z   Downloading myst_parser-2.0.0-py3-none-any.whl.metadata (5.4 kB)
2024-08-13T16:38:47.4980538Z Collecting pyyaml (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.5012144Z   Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
2024-08-13T16:38:47.5628291Z Collecting sphinx<8,>=5 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.5660704Z   Downloading sphinx-7.4.7-py3-none-any.whl.metadata (6.1 kB)
2024-08-13T16:38:47.6450637Z Collecting sphinx-comments (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.6490875Z   Downloading sphinx_comments-0.0.3-py3-none-any.whl.metadata (3.3 kB)
2024-08-13T16:38:47.6670910Z Collecting sphinx-copybutton (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.6701896Z   Downloading sphinx_copybutton-0.5.2-py3-none-any.whl.metadata (3.2 kB)
2024-08-13T16:38:47.6907182Z Collecting sphinx-external-toc<2,>=1.0.1 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.6945797Z   Downloading sphinx_external_toc-1.0.1-py3-none-any.whl.metadata (15 kB)
2024-08-13T16:38:47.7794936Z Collecting sphinx-jupyterbook-latex<2,>=1 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.7898173Z   Downloading sphinx_jupyterbook_latex-1.0.0-py3-none-any.whl.metadata (3.7 kB)
2024-08-13T16:38:47.8111121Z Collecting sphinx-design<1,>=0.5 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.8141120Z   Downloading sphinx_design-0.6.1-py3-none-any.whl.metadata (5.5 kB)
2024-08-13T16:38:47.8296635Z Collecting sphinx-thebe<1,>=0.3 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.8334148Z   Downloading sphinx_thebe-0.3.1-py3-none-any.whl.metadata (2.6 kB)
2024-08-13T16:38:47.8682505Z Collecting sphinx-book-theme<2,>=1.1.0 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.8719267Z   Downloading sphinx_book_theme-1.1.3-py3-none-any.whl.metadata (5.7 kB)
2024-08-13T16:38:47.8883704Z Collecting sphinx_togglebutton (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.8914654Z   Downloading sphinx_togglebutton-0.3.2-py3-none-any.whl.metadata (2.4 kB)
2024-08-13T16:38:47.9097409Z Collecting sphinxcontrib-bibtex<3,>=2.5.0 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.9173458Z   Downloading sphinxcontrib_bibtex-2.6.2-py3-none-any.whl.metadata (6.1 kB)
2024-08-13T16:38:47.9298003Z Collecting sphinx-multitoc-numbering<1,>=0.1.3 (from jupyter-book->-r requirements.txt (line 1))
2024-08-13T16:38:47.9336326Z   Downloading sphinx_multitoc_numbering-0.1.3-py3-none-any.whl.metadata (2.6 kB)
2024-08-13T16:38:47.9952359Z Collecting contourpy>=1.0.1 (from matplotlib->-r requirements.txt (line 2))
2024-08-13T16:38:47.9987023Z   Downloading contourpy-1.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB)
2024-08-13T16:38:48.0127298Z Collecting cycler>=0.10 (from matplotlib->-r requirements.txt (line 2))
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2024-08-13T16:38:53.1742578Z Installing collected packages: wcwidth, snowballstemmer, pure-eval, ptyprocess, fastjsonschema, zipp, wheel, urllib3, uc-micro-py, typing-extensions, traitlets, tornado, tabulate, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, six, rpds-py, pyzmq, pyyaml, pyparsing, Pygments, psutil, prompt-toolkit, platformdirs, pillow, pexpect, parso, packaging, numpy, nest-asyncio, mdurl, MarkupSafe, latexcodec, kiwisolver, imagesize, idna, greenlet, fonttools, executing, docutils, decorator, debugpy, cycler, click, charset-normalizer, certifi, babel, attrs, alabaster, sqlalchemy, requests, referencing, python-dateutil, pybtex, matplotlib-inline, markdown-it-py, linkify-it-py, jupyter-core, Jinja2, jedi, importlib_metadata, contourpy, comm, beautifulsoup4, asttokens, accessible-pygments, stack-data, sphinx, pybtex-docutils, mdit-py-plugins, matplotlib, jupyter-client, jsonschema-specifications, ghp-import, sphinxcontrib-bibtex, sphinx_togglebutton, sphinx-thebe, sphinx-multitoc-numbering, sphinx-jupyterbook-latex, sphinx-external-toc, sphinx-design, sphinx-copybutton, sphinx-comments, pydata-sphinx-theme, myst-parser, jsonschema, ipython, sphinx-book-theme, nbformat, ipykernel, nbclient, jupyter-cache, myst-nb, jupyter-book
2024-08-13T16:39:05.0717844Z Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 Pygments-2.18.0 accessible-pygments-0.0.5 alabaster-0.7.16 asttokens-2.4.1 attrs-24.2.0 babel-2.16.0 beautifulsoup4-4.12.3 certifi-2024.7.4 charset-normalizer-3.3.2 click-8.1.7 comm-0.2.2 contourpy-1.2.1 cycler-0.12.1 debugpy-1.8.5 decorator-5.1.1 docutils-0.20.1 executing-2.0.1 fastjsonschema-2.20.0 fonttools-4.53.1 ghp-import-2.1.0 greenlet-3.0.3 idna-3.7 imagesize-1.4.1 importlib_metadata-8.2.0 ipykernel-6.29.5 ipython-8.26.0 jedi-0.19.1 jsonschema-4.23.0 jsonschema-specifications-2023.12.1 jupyter-book-1.0.2 jupyter-cache-1.0.0 jupyter-client-8.6.2 jupyter-core-5.7.2 kiwisolver-1.4.5 latexcodec-3.0.0 linkify-it-py-2.0.3 markdown-it-py-3.0.0 matplotlib-3.9.2 matplotlib-inline-0.1.7 mdit-py-plugins-0.4.1 mdurl-0.1.2 myst-nb-1.1.1 myst-parser-2.0.0 nbclient-0.10.0 nbformat-5.10.4 nest-asyncio-1.6.0 numpy-2.0.1 packaging-24.1 parso-0.8.4 pexpect-4.9.0 pillow-10.4.0 platformdirs-4.2.2 prompt-toolkit-3.0.47 psutil-6.0.0 ptyprocess-0.7.0 pure-eval-0.2.3 pybtex-0.24.0 pybtex-docutils-1.0.3 pydata-sphinx-theme-0.15.4 pyparsing-3.1.2 python-dateutil-2.9.0.post0 pyyaml-6.0.2 pyzmq-26.1.0 referencing-0.35.1 requests-2.32.3 rpds-py-0.20.0 six-1.16.0 snowballstemmer-2.2.0 soupsieve-2.6 sphinx-7.4.7 sphinx-book-theme-1.1.3 sphinx-comments-0.0.3 sphinx-copybutton-0.5.2 sphinx-design-0.6.1 sphinx-external-toc-1.0.1 sphinx-jupyterbook-latex-1.0.0 sphinx-multitoc-numbering-0.1.3 sphinx-thebe-0.3.1 sphinx_togglebutton-0.3.2 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-bibtex-2.6.2 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 sqlalchemy-2.0.32 stack-data-0.6.3 tabulate-0.9.0 tornado-6.4.1 traitlets-5.14.3 typing-extensions-4.12.2 uc-micro-py-1.0.3 urllib3-2.2.2 wcwidth-0.2.13 wheel-0.44.0 zipp-3.20.0
2024-08-13T16:39:05.7884628Z ##[group]Run jupyter-book build deep-learning-intro-for-hep
2024-08-13T16:39:05.7885287Z jupyter-book build deep-learning-intro-for-hep
2024-08-13T16:39:05.7951919Z shell: /usr/bin/bash -e {0}
2024-08-13T16:39:05.7952283Z env:
2024-08-13T16:39:05.7952827Z   BASE_URL: /deep-learning-intro-for-hep
2024-08-13T16:39:05.7953395Z   pythonLocation: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:05.7954022Z   PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.11.9/x64/lib/pkgconfig
2024-08-13T16:39:05.7954819Z   Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:05.7955431Z   Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:05.7956102Z   Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:05.7956672Z   LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.11.9/x64/lib
2024-08-13T16:39:05.7957201Z ##[endgroup]
2024-08-13T16:39:06.3874512Z Running Jupyter-Book v1.0.2
2024-08-13T16:39:06.3886904Z Source Folder: /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep
2024-08-13T16:39:06.3889311Z Config Path: /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/_config.yml
2024-08-13T16:39:06.3891190Z Output Path: /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/_build/html
2024-08-13T16:39:06.4006843Z Running Sphinx v7.4.7
2024-08-13T16:39:06.4010891Z loading translations [en]... done
2024-08-13T16:39:08.0138310Z making output directory... done
2024-08-13T16:39:08.0160660Z [etoc] Changing master_doc to 'intro'
2024-08-13T16:39:08.0853332Z checking bibtex cache... out of date
2024-08-13T16:39:08.1369755Z parsing bibtex file /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/references.bib... parsed 5 entries
2024-08-13T16:39:08.1589431Z myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'dollarmath', 'linkify', 'substitution', 'tasklist', 'colon_fence'}, disable_syntax=[], all_links_external=False, url_schemes=('mailto', 'http', 'https'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True)
2024-08-13T16:39:08.1601847Z myst-nb v1.1.1: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, eval_name_regex='^[a-zA-Z_][a-zA-Z0-9_]*$', execution_mode='force', execution_cache_path='', execution_excludepatterns=[], execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False)
2024-08-13T16:39:08.1609249Z Using jupyter-cache at: /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/_build/.jupyter_cache
2024-08-13T16:39:08.1611258Z sphinx-multitoc-numbering v0.1.3: Loaded
2024-08-13T16:39:08.1621608Z building [mo]: targets for 0 po files that are out of date
2024-08-13T16:39:08.1622799Z writing output... 
2024-08-13T16:39:08.1655587Z building [html]: targets for 5 source files that are out of date
2024-08-13T16:39:08.1670573Z updating environment: [new config] 5 added, 0 changed, 0 removed
2024-08-13T16:39:08.1673518Z reading sources... [ 20%] content
2024-08-13T16:39:08.1813495Z reading sources... [ 40%] intro
2024-08-13T16:39:08.1923129Z reading sources... [ 60%] markdown
2024-08-13T16:39:08.2041213Z reading sources... [ 80%] markdown-notebooks
2024-08-13T16:39:08.2499671Z /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/markdown-notebooks.md: Executing notebook using local CWD [mystnb]
2024-08-13T16:39:09.0924537Z /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/markdown-notebooks.md: Executed notebook in 0.84 seconds [mystnb]
2024-08-13T16:39:09.1002023Z reading sources... [100%] notebooks
2024-08-13T16:39:09.1316410Z /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/notebooks.ipynb: Executing notebook using local CWD [mystnb]
2024-08-13T16:39:11.4776245Z /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/notebooks.ipynb: Executed notebook in 2.35 seconds [mystnb]
2024-08-13T16:39:11.4942890Z 
2024-08-13T16:39:11.5802968Z looking for now-outdated files... none found
2024-08-13T16:39:11.5824050Z pickling environment... done
2024-08-13T16:39:11.5827064Z /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/content.md: WARNING: document isn't included in any toctree
2024-08-13T16:39:11.5829172Z checking consistency... done
2024-08-13T16:39:11.5844211Z preparing documents... done
2024-08-13T16:39:11.5845229Z copying assets... 
2024-08-13T16:39:11.6280024Z copying static files... done
2024-08-13T16:39:11.6281182Z copying extra files... done
2024-08-13T16:39:11.6282118Z copying assets: done
2024-08-13T16:39:11.6284083Z writing output... [ 20%] content
2024-08-13T16:39:11.7413146Z writing output... [ 40%] intro
2024-08-13T16:39:11.7531956Z writing output... [ 60%] markdown
2024-08-13T16:39:11.7736692Z writing output... [ 80%] markdown-notebooks
2024-08-13T16:39:11.8343606Z writing output... [100%] notebooks
2024-08-13T16:39:11.8679623Z 
2024-08-13T16:39:11.8833868Z generating indices... genindex done
2024-08-13T16:39:11.8914385Z writing additional pages... search done
2024-08-13T16:39:11.8917623Z copying images... [100%] _build/jupyter_execute/a31e63b1f6ca34376ef17d2b6c277648c6b47bb0a75c5165999735167a988593.png
2024-08-13T16:39:11.8920004Z 
2024-08-13T16:39:11.8929599Z dumping search index in English (code: en)... done
2024-08-13T16:39:11.8932767Z dumping object inventory... done
2024-08-13T16:39:11.8938145Z [etoc] missing index.html written as redirect to 'intro.html'
2024-08-13T16:39:11.9177600Z build succeeded, 1 warning.
2024-08-13T16:39:11.9178122Z 
2024-08-13T16:39:11.9178728Z The HTML pages are in deep-learning-intro-for-hep/_build/html.
2024-08-13T16:39:11.9184039Z 
2024-08-13T16:39:11.9184673Z ===============================================================================
2024-08-13T16:39:11.9187895Z 
2024-08-13T16:39:11.9188184Z Finished generating HTML for book.
2024-08-13T16:39:11.9206804Z Your book's HTML pages are here:
2024-08-13T16:39:11.9207766Z     deep-learning-intro-for-hep/_build/html/
2024-08-13T16:39:11.9208959Z You can look at your book by opening this file in a browser:
2024-08-13T16:39:11.9209658Z     deep-learning-intro-for-hep/_build/html/index.html
2024-08-13T16:39:11.9210314Z Or paste this line directly into your browser bar:
2024-08-13T16:39:11.9211425Z     file:///home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep/deep-learning-intro-for-hep/_build/html/index.html            
2024-08-13T16:39:11.9212209Z 
2024-08-13T16:39:11.9212468Z ===============================================================================
2024-08-13T16:39:11.9212896Z 
2024-08-13T16:39:12.2225547Z ##[group]Run actions/upload-pages-artifact@v2
2024-08-13T16:39:12.2226005Z with:
2024-08-13T16:39:12.2226314Z   path: _build/html
2024-08-13T16:39:12.2227114Z   name: github-pages
2024-08-13T16:39:12.2227468Z   retention-days: 1
2024-08-13T16:39:12.2227804Z env:
2024-08-13T16:39:12.2228217Z   BASE_URL: /deep-learning-intro-for-hep
2024-08-13T16:39:12.2228738Z   pythonLocation: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:12.2229373Z   PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.11.9/x64/lib/pkgconfig
2024-08-13T16:39:12.2230097Z   Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:12.2230620Z   Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:12.2231183Z   Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:12.2231839Z   LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.11.9/x64/lib
2024-08-13T16:39:12.2232286Z ##[endgroup]
2024-08-13T16:39:12.2425981Z ##[group]Run tar \
2024-08-13T16:39:12.2426525Z tar \
2024-08-13T16:39:12.2426944Z   --dereference --hard-dereference \
2024-08-13T16:39:12.2427380Z   --directory "$INPUT_PATH" \
2024-08-13T16:39:12.2427923Z   -cvf "$RUNNER_TEMP/artifact.tar" \
2024-08-13T16:39:12.2428396Z   --exclude=.git \
2024-08-13T16:39:12.2428776Z   --exclude=.github \
2024-08-13T16:39:12.2429199Z   .
2024-08-13T16:39:12.2495804Z shell: /usr/bin/sh -e {0}
2024-08-13T16:39:12.2496359Z env:
2024-08-13T16:39:12.2496669Z   BASE_URL: /deep-learning-intro-for-hep
2024-08-13T16:39:12.2497222Z   pythonLocation: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:12.2497963Z   PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.11.9/x64/lib/pkgconfig
2024-08-13T16:39:12.2498548Z   Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:12.2499124Z   Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:12.2499759Z   Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.9/x64
2024-08-13T16:39:12.2500554Z   LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.11.9/x64/lib
2024-08-13T16:39:12.2501185Z   INPUT_PATH: _build/html
2024-08-13T16:39:12.2501673Z ##[endgroup]
2024-08-13T16:39:12.2600103Z tar: _build/html: Cannot open: No such file or directory
2024-08-13T16:39:12.2600915Z tar: Error is not recoverable: exiting now
2024-08-13T16:39:12.2614022Z ##[error]Process completed with exit code 2.
2024-08-13T16:39:12.2732705Z Post job cleanup.
2024-08-13T16:39:12.3458470Z [command]/usr/bin/git version
2024-08-13T16:39:12.3494467Z git version 2.46.0
2024-08-13T16:39:12.3545638Z Temporarily overriding HOME='/home/runner/work/_temp/f3344c32-494b-442c-badd-9ec4749d9ac3' before making global git config changes
2024-08-13T16:39:12.3547475Z Adding repository directory to the temporary git global config as a safe directory
2024-08-13T16:39:12.3551251Z [command]/usr/bin/git config --global --add safe.directory /home/runner/work/deep-learning-intro-for-hep/deep-learning-intro-for-hep
2024-08-13T16:39:12.3585827Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2024-08-13T16:39:12.3617463Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
2024-08-13T16:39:12.3866479Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2024-08-13T16:39:12.3889265Z http.https://github.com/.extraheader
2024-08-13T16:39:12.3900327Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader
2024-08-13T16:39:12.3933947Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
2024-08-13T16:39:12.4399888Z Cleaning up orphan processes

Reproduce the bug

See above.

List your environment

% jupyter-book --version

Jupyter Book      : 1.0.2
External ToC      : 1.0.1
MyST-Parser       : 2.0.0
MyST-NB           : 1.1.1
Sphinx Book Theme : 1.1.3
Jupyter-Cache     : 1.0.0
NbClient          : 0.10.0
chillerb commented 1 month ago

I just encountered the same issue. Did you find a solution? I haven't really looked into it yet.

jpivarski commented 1 month ago

I think I just fixed the output of the cookie recipe until it did work.

Yes: the last time the deployment ran, it succeeded. The deployment is accessible. (Ignore the content; it's far from done.)

The two commits that might be relevant are:

I don't see any other changes that I made to configuration files. (Sorry that the second one is mixed with edits of the content.)

chillerb commented 1 month ago

Ok, here is a hot fix for everyone else, while this bug still persists: Since the cookie-cutter template wraps around the actual jupyter book, the build path is off in the github workflows.

In the deploy-book action by .github/workflows/deploy.yml, change the path as follows:

# Upload the book's HTML as an artifact
      - name: Upload artifact
        uses: actions/upload-pages-artifact@v2
        with:
          path: "{YOUR BOOK DIRECTORY}/_build/html"
chillerb commented 1 month ago

I think I just fixed the output of the cookie recipe until it did work.

Yes: the last time the deployment ran, it succeeded. The deployment is accessible. (Ignore the content; it's far from done.)

The two commits that might be relevant are:

* [hsf-training/deep-learning-intro-for-hep@5cee3da](https://github.com/hsf-training/deep-learning-intro-for-hep/commit/5cee3da3538ddbb35ce9d1731d71af7ffc90aaaf)

* [hsf-training/deep-learning-intro-for-hep@85516b7](https://github.com/hsf-training/deep-learning-intro-for-hep/commit/85516b761f3670fd52aabe7cd4201a955faaca11)

I don't see any other changes that I made to configuration files. (Sorry that the second one is mixed with edits of the content.)

Oops, just saw your reply. Sorry if you already gave the solution.

jpivarski commented 1 month ago

@chillerb, your information is much more specific and helpful than mine. I tried to turn your hot-fix into a permanent fix, #48, but it will need to be tested.