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exomiser / Exomiser

A Tool to Annotate and Prioritize Exome Variants
https://exomiser.readthedocs.io
GNU Affero General Public License v3.0
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Missing maven artefacts for sonumina - PhenIX dependencies. #460

Closed julesjacobsen closed 1 year ago

julesjacobsen commented 1 year ago

The repository http://sonumina.de/maven has vanished without trace. These jar files need adding to the local maven repository for the build to complete:

sonumina.tar.gz

These are required for PhenIX to function, however the source data for this has become very stale so we're going to remove it from the application.

pnrobinson commented 1 year ago

can we instead work on updating PhenIX? There is no reason it could not be run from other data available, possibly with a few minor tweaks.

julesjacobsen commented 1 year ago

OK, but for the time being this will have to be disabled as unless someone has these artifacts available in their maven repo, Exomiser will not build.

sam-osia commented 1 year ago

I'm quite new to the field. I was trying to build exomiser and have ran into this issue. Is there anyway around this at the moment?

julesjacobsen commented 1 year ago

@sam-osia Yes, install the artifacts I provided in the tar file to your maven repo where you're building exomiser. Alternatively, download the pre-built binary from the releases page.

julesjacobsen commented 1 year ago

This is now fixed on the development branch and set for the 13.2.0 release.