exomiser / Exomiser

A Tool to Annotate and Prioritize Exome Variants
https://exomiser.readthedocs.io
GNU Affero General Public License v3.0
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Update `application.properties` `variant-white-list-path` to `use-clinvar-whitelist` #462

Closed julesjacobsen closed 11 months ago

julesjacobsen commented 1 year ago

Change exomiser.hg38.variant-white-list-path to exomiser.hg38.use-clinvar-whitelist.

e.g.

exomiser.hg38.variant-white-list-path=${exomiser.hg38.data-version}_hg38_clinvar_whitelist.tsv.gz
# to
exomiser.hg38.use-clinvar-whitelist=true
julesjacobsen commented 1 year ago

or just add the use-clinvar-whitelist property and allow users to add their own independently

exomiser.hg38.variant-white-list-path=path/to/users/variant_whitelist.tsv.gz
exomiser.hg38.use-clinvar-whitelist=true # will add the clinvar data to the whitelist (default true) 
julesjacobsen commented 11 months ago

Add in commit 1c42ed6