Exomiser CLI on docker hub (https://hub.docker.com/r/exomiser/exomiser-cli) is currently using a distroless container which makes it impossible to incorporate into Nextflow pipelines as it lacks a Bash shell / login which Nextflow uses to execute commands in.
Exomiser CLI on docker hub (https://hub.docker.com/r/exomiser/exomiser-cli) is currently using a distroless container which makes it impossible to incorporate into Nextflow pipelines as it lacks a Bash shell / login which Nextflow uses to execute commands in.
Exomiser uses Jib (https://github.com/GoogleContainerTools/jib/blob/master/docs/default_base_image.md) but uses the distroless image
gcr.io/distroless/java17@sha256:ab37242e81cbc031b2600eef4440fe87055a05c14b40686df85078cc5086c98fChange this image to a Java 17 image with a shell Alpine images are nice and small...
Being able to also build an aarch64 image would be a bonus for Apple Silicon Mac users.