Re-compiling signit
─ installing *source* package ‘signit’ ...
** using staged installation
** libs
"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/population_model.stan
Wrote C++ file "stan_files/population_model.cc"
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"`"/Library/Frameworks/R.framework/Resources/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=ignore_error -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0 -fdiagnostics-color=always -c stan_files/population_model.cc -o stan_files/population_model.o
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
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In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/random/detail/integer_log2.hpp:19:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use <boost/integer/integer_log2.hpp> instead. [-W#pragma-messages]
BOOST_HEADER_DEPRECATED("<boost/integer/integer_log2.hpp>");
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
^
<scratch space>:76:2: note: expanded from here
message("This header is deprecated. Use " "<boost/integer/integer_log2.hpp>" " instead.")
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
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In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Dense:1:
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/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Dense:2:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/LU:47:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
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/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Dense:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Cholesky:43:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Dense:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/QR:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Householder:27:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Dense:5:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/SVD:48:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Dense:6:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Geometry:58:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Dense:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Eigenvalues:58:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Sparse:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/SparseCore:66:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Sparse:27:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/OrderingMethods:71:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Sparse:29:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/SparseCholesky:43:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Sparse:32:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/SparseQR:35:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/Sparse:33:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:32:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/CholmodSupport:45:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:39:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/RcppEigenForward.h:40:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/mat.hpp:344:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/quantity.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/conversion.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/heterogeneous_system.hpp:34:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
<boost/typeof/incr_registration_group.hpp>
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/mat.hpp:344:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/quantity.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/conversion.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/dimension.hpp:21:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
<boost/typeof/incr_registration_group.hpp>
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/mat.hpp:344:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/quantity.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/conversion.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/dimension.hpp:21:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/dimension_list.hpp:131:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
<boost/typeof/incr_registration_group.hpp>
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/mat.hpp:344:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/quantity.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/conversion.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/linear_algebra.hpp:20:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
<boost/typeof/incr_registration_group.hpp>
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/mat.hpp:344:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/quantity.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/conversion.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/unscale.hpp:28:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
<boost/typeof/incr_registration_group.hpp>
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/mat.hpp:344:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/quantity.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/conversion.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/conversion_impl.hpp:20:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
<boost/typeof/incr_registration_group.hpp>
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/mat.hpp:344:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/quantity.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/conversion.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/detail/conversion_impl.hpp:21:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
<boost/typeof/incr_registration_group.hpp>
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/mat.hpp:344:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
<boost/typeof/incr_registration_group.hpp>
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:41:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:6:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:31:27: error: no template named 'index_sequence' in namespace 'std'; did you mean 'boost::fusion::detail::index_sequence'?
std::index_sequence<I...> i) {
^~~~~~~~~~~~~~~~~~~
boost::fusion::detail::index_sequence
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/fusion/support/detail/index_sequence.hpp:37:12: note: 'boost::fusion::detail::index_sequence' declared here
struct index_sequence
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:41:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:6:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:30:11: error: 'auto' return without trailing return type; deduced return types are a C++14 extension
constexpr auto apply_impl(const F& f, const Tuple& t,
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:48:11: error: 'auto' return without trailing return type; deduced return types are a C++14 extension
constexpr auto apply(const F& f, const Tuple& t) {
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:49:27: error: no template named 'make_index_sequence' in namespace 'std'; did you mean 'boost::fusion::detail::make_index_sequence'?
return apply_impl(f, t, std::make_index_sequence<std::tuple_size<Tuple>{}>{});
^~~~~~~~~~~~~~~~~~~~~~~~
boost::fusion::detail::make_index_sequence
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include/boost/fusion/support/detail/index_sequence.hpp:59:12: note: 'boost::fusion::detail::make_index_sequence' declared here
struct make_index_sequence
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:41:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:6:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:151:14: error: no template named 'result_of_t' in namespace 'std'; did you mean 'result_of'?
= std::result_of_t<F(decltype(is_var_), decltype(value_of(Targs()))...)>;
~~~~~^~~~~~~~~~~
result_of
/Library/Developer/CommandLineTools/usr/include/c++/v1/type_traits:2863:34: note: 'result_of' declared here
template <class _Callable> class result_of;
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:41:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:6:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:408:3: error: 'auto' return without trailing return type; deduced return types are a C++14 extension
auto operator()(const Targs&... args) {
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:536:16: error: 'auto' not allowed in lambda parameter
[this](auto&&... args) { this->accumulate_adjoints(args...); },
^~~~
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:536:22: error: type 'int &&' of function parameter pack does not contain any unexpanded parameter packs
[this](auto&&... args) { this->accumulate_adjoints(args...); },
~~~~~~^~~~~~~~
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:616:1: error: 'auto' return without trailing return type; deduced return types are a C++14 extension
auto adj_jac_apply(const Targs&... args) {
^
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:41:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:60:3: error: 'auto' return without trailing return type; deduced return types are a C++14 extension
auto multiply_adjoint_jacobian(const std::array<bool, size>& needs_adj,
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:73:12: error: no viable conversion from returned value of type 'tuple<typename __make_tuple_return<Matrix<double, -1, 1, 0, -1, 1> &>::type>' (aka 'tuple<Eigen::Matrix<double, -1, 1, 0, -1, 1> >') to function return type 'int'
return std::make_tuple(adj_times_jac);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:88:10: error: no matching function for call to 'adj_jac_apply'
return adj_jac_apply<internal::ordered_constrain_op>(x);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:42:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/positive_ordered_constrain.hpp:61:3: error: 'auto' return without trailing return type; deduced return types are a C++14 extension
auto multiply_adjoint_jacobian(const std::array<bool, size>& needs_adj,
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/positive_ordered_constrain.hpp:71:12: error: no viable conversion from returned value of type 'tuple<typename __make_tuple_return<Matrix<double, -1, 1, 0, -1, 1> &>::type>' (aka 'tuple<Eigen::Matrix<double, -1, 1, 0, -1, 1> >') to function return type 'int'
return std::make_tuple(adj_times_jac);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/positive_ordered_constrain.hpp:86:10: error: no matching function for call to 'adj_jac_apply'
return adj_jac_apply<internal::positive_ordered_constrain_op>(x);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:48:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/simplex_constrain.hpp:66:3: error: 'auto' return without trailing return type; deduced return types are a C++14 extension
auto multiply_adjoint_jacobian(const std::array<bool, size>& needs_adj,
^
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/simplex_constrain.hpp:79:12: error: no viable conversion from returned value of type 'tuple<typename __make_tuple_return<Matrix<double, -1, 1, 0, -1, 1> &>::type>' (aka 'tuple<Eigen::Matrix<double, -1, 1, 0, -1, 1> >') to function return type 'int'
return std::make_tuple(adj_times_jac);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/simplex_constrain.hpp:97:10: error: no matching function for call to 'adj_jac_apply'
return adj_jac_apply<internal::simplex_constrain_op>(y);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from stan_files/population_model.cc:3:
In file included from stan_files/population_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat.hpp:49:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/StanHeaders/include/stan/math/rev/mat/fun/softmax.hpp:78:10: error: no matching function for call to 'adj_jac_apply'
return adj_jac_apply<internal::softmax_op>(alpha);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
26 warnings and 19 errors generated.
rm stan_files/population_model.cc
make: *** [stan_files/population_model.o] Error 1
ERROR: compilation failed for package ‘signit’
SeanTomlinson30
commented
5 years ago