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f-hamidlab / nuclearpy

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Segmentation Identify cells positive to the markers #17

Closed Marcel-Salier closed 2 years ago

Marcel-Salier commented 2 years ago

I got this segmenting a new group of picts:

ngs.markerGroup(n_groups = 5, sample_size = 10) # A large sample size is time consuming.

TypeError Traceback (most recent call last) Input In [19], in <cell line: 1>() ----> 1 ngs.markerGroup(n_groups = 5, sample_size = 10)

TypeError: NuclearGame_Segmentation.markerGroup() got an unexpected keyword argument 'sample_size'

fursham-h commented 2 years ago

Remove the sample_size argument. The function is now fast enough to calculate groups on all images.

ngs.markerGroup(n_groups = 5)