Closed fursham-h closed 2 years ago
@Marcel-Salier I have implemented a temporary fix for this. Basically the problem arose because nuclei that are very small (16 pixel square) went through erosion and ended up with no nuclei at all. I changed the code to skip the calculation of core intensity for these small nuclei.
The better solution is to remove these nuclei first. Will work on this next time.
Raising new issue to address error in
add_nuclear_features
. Error message isError arise due to segmented nuclei being too small and ended with no area after erosion
Solution 1: to update area of nuclei that are left Solution 2: to remove small nuclei from the beginning