Closed clemdawg closed 3 years ago
This is most likely an issue with the lambda2 conda distribution not containing executables for MacOS. This could only be fixed by the maintainers of that package including them.
A possible workaround might be to install lambda manually and change the rules that use it to not use conda (or run those rules on their own without the use-conda flag).
Hi Felix,
sorry for not responding earlier.
Alice helped me fix the problem with the lamba2 installation.
The pipeline seems to work now.
Have a nice weekend.
Clemens
On 09.04.2021, at 10:26, Felix Heeger @.***> wrote:
This is most likely an issue with the lambda2 conda distribution not containing executables for MacOS. This could only be fixed by the maintainers of that package including them.
A possible workaround might be to install lambda manually and change the rules that use it to not use conda (or run those rules on their own without the use-conda flag).
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Hello Felix,
After the installation I tried: snakemake --use-conda -s metabarcoding.snakemake.py -j 2
I get the following error message Building DAG of jobs... Creating conda environment envs/multiqc.yaml... Downloading and installing remote packages. Environment for envs/multiqc.yaml created (location: .snakemake/conda/2a0756b32b9f6d2e127d146793de8ded) Creating conda environment envs/vsearch.yaml... Downloading and installing remote packages. Environment for envs/vsearch.yaml created (location: .snakemake/conda/742f1cbd61c45fbba553b1c74ecedf32) Creating conda environment envs/lambda.yaml... Downloading and installing remote packages. CreateCondaEnvironmentException: Could not create conda environment from /Users/home/fungi_pipe/two_marker_metabarcoding-master/envs/lambda.yaml: Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed
ResolvePackageNotFound:
File "/Users/home/miniconda3/envs/snakemake/lib/python3.9/site-packages/snakemake/deployment/conda.py", line 387, in create
Any idea how I can resolve this?