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fabfabBesnard / Parallel-Variant-Calling

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Create an option to activate the sampling script in a nextflow pipe #7

Closed fabfabBesnard closed 2 years ago

fabfabBesnard commented 2 years ago

Desired behavior: in the config file for an analysis, if the option 'sample' (or something equivalent + the fraction - but default value is also good) is provided, the pipe will be run on a new sampling from original read

maliktalbi commented 2 years ago

option --sample available in the pipeline. You just have to put the --sample option with a fraction of the pipe ( number between 0 and 1).

maliktalbi commented 2 years ago

Add the Empty_sample_dir process to check and to empty the sample repository