installation from source file failed

[zhaoni153]

Dear Fabian,

When I tried to install from source file in my linux machine using install.packages("PATH/RLRsim_3.0.tar.gz", repos = NULL, type="source") Error message reported as

*\ arch - i386 ERROR: compilation failed for package 'RLRsim'

However, intallation using the windows binary works for my windows machine. What might be the reason?

Thanks a lot. Ni

[fabian-s]

weird...

can you send the sessionInfo() before this happens and the complete output of

install.packages("PATH/RLRsim_3.0.tar.gz", repos = NULL, type="source")

[zhaoni153]

Sure.

sessionInfo() R version 2.14.0 (2011-10-31) Platform: x86_64-unknown-linux-gnu (64-bit)

locale: [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C [3] LC_TIME=en_US.iso885915 LC_COLLATE=en_US.iso885915 [5] LC_MONETARY=en_US.iso885915 LC_MESSAGES=en_US.iso885915 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.iso885915 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

And the complete output:

inferring 'repos = NULL' from the file name

• installing source package 'RLRsim' ... * package 'RLRsim' successfully unpacked and MD5 sums checked * libs g++ -I/nas02/apps/r-2.14.0/lib64/R/include -I/usr/local/include -I"/nas02/apps/r-2.14.0/lib64/R/library/Rcpp/include" -fpic -g -O2 -c RLRsim.cpp -o RLRsim.o g++ -I/nas02/apps/r-2.14.0/lib64/R/include -I/usr/local/include -I"/nas02/apps/r-2.14.0/lib64/R/library/Rcpp/include" -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o RcppExports.cpp: In function 'SEXPREC* RLRsimRLRsimCpp(SEXPREC, SEXPREC, SEXPREC, SEXPREC, SEXPREC, SEXPREC, SEXPREC, SEXPREC, SEXPREC, SEXPREC, SEXPREC)': RcppExports.cpp:15: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:15: error: expected primary-expression before 'int' RcppExports.cpp:15: error: expected ;' before 'int' RcppExports.cpp:16: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:16: error: expected primary-expression before 'int' RcppExports.cpp:16: error: expected;' before 'int' RcppExports.cpp:17: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:17: error: expected primary-expression before 'int' RcppExports.cpp:17: error: expected ;' before 'int' RcppExports.cpp:18: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:18: error: expected primary-expression before 'int' RcppExports.cpp:18: error: expected;' before 'int' RcppExports.cpp:19: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:19: error: expected primary-expression before 'int' RcppExports.cpp:19: error: expected ;' before 'int' RcppExports.cpp:20: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:20: error: expected primary-expression before 'int' RcppExports.cpp:20: error: expected;' before 'int' RcppExports.cpp:21: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:21: error: expected primary-expression before '>' token RcppExports.cpp:21: error: '::type' has not been declared RcppExports.cpp:21: error: expected ;' before 'mu' RcppExports.cpp:22: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:22: error: expected primary-expression before '>' token RcppExports.cpp:22: error: '::type' has not been declared RcppExports.cpp:22: error: expected;' before 'lambda' RcppExports.cpp:23: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:23: error: expected primary-expression before 'double' RcppExports.cpp:23: error: expected ;' before 'double' RcppExports.cpp:24: error: 'input_parameter' is not a member of 'Rcpp::traits' RcppExports.cpp:24: error: expected primary-expression before '>' token RcppExports.cpp:24: error: '::type' has not been declared RcppExports.cpp:24: error: expected;' before 'xi' RcppExports.cpp:25: error: 'inputparameter' is not a member of 'Rcpp::traits' RcppExports.cpp:25: error: expected primary-expression before 'bool' RcppExports.cpp:25: error: expected `;' before 'bool' RcppExports.cpp:26: error: 'p' was not declared in this scope RcppExports.cpp:26: error: 'k' was not declared in this scope RcppExports.cpp:26: error: 'n' was not declared in this scope RcppExports.cpp:26: error: 'nsim' was not declared in this scope RcppExports.cpp:26: error: 'g' was not declared in this scope RcppExports.cpp:26: error: 'q' was not declared in this scope RcppExports.cpp:26: error: 'mu' was not declared in this scope RcppExports.cpp:26: error: 'lambda' was not declared in this scope RcppExports.cpp:26: error: 'lambda0' was not declared in this scope RcppExports.cpp:26: error: 'xi' was not declared in this scope RcppExports.cpp:26: error: 'REML' was not declared in this scope make: ** [RcppExports.o] Error 1 ERROR: compilation failed for package 'RLRsim'
• removing '/netscr/nzhao/Dissertation/Rlib/RLRsim' Warning message: In install.packages("/netscr/nzhao/Dissertation/software/RLRsim_3.0.tar.gz", : installation of package '/netscr/nzhao/Dissertation/software/RLRsim_3.0.tar.gz' had non-zero exit status

Weirdly I successfully installed the package using my husband's laptop, which is also a linux machine. Here I attached the sessionInfor for that machine (which successfully installed the package):

R version 3.1.1 (2014-07-10) Platform: x86_64-unknown-linux-gnu (64-bit)

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] RLRsim_3.0

loaded via a namespace (and not attached): [1] Rcpp_0.11.2

Thanks a lot for your quick response.

Ni

On Fri, Aug 15, 2014 at 9:27 AM, Fabian Scheipl notifications@github.com wrote:

weird...

can you send the sessionInfo() before this happens and the complete output of

install.packages("PATH/RLRsim_3.0.tar.gz", repos = NULL, type="source")

— Reply to this email directly or view it on GitHub https://github.com/fabian-s/RLRsim/issues/3#issuecomment-52327424.

[fabian-s]

Seems like RLRSim needs a more recent Rcpp than the one you have, and that, in turn, means you'll need to install a more recent R with version > 3.0.0, I'm afraid. You're on 2.14.1, CRAN is at 3.1.1