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fabilab / cell_atlas_approximations_API

APIs for cell atlas approximations
MIT License
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API returns 400 error for cell types containing an underscore (_) #35

Open YingX97 opened 2 months ago

YingX97 commented 2 months ago

Hi Fabio, I try to query the API with cell types that contain an underscore (_), and it returns a 400 error.

`

let api = require('@fabilab/atlasapprox') let params = {organism:"a_thaliana",organ:"shoot",celltype:"proliferating_epi"} await api.markers(params) Uncaught: { status: 400, message: 'Cell type not found: proliferating epi.', error: { type: 'invalid_parameter', invalid_parameter: 'celltype', invalid_value: 'proliferating epi' } }`

cheers, Ying

iosonofabio commented 2 months ago

yep, it's a bug generated by an attempt to be nice to the chatbot. I'm "fixing' it now as in no cell types will have underscores, but the user can still use underscores and they will be converted into spaces.

Better ideas welcome