Suppose the scenario where a sequence of length 1000 and window size is set to 200. For a mutation at position say 300, all the graph features above 500 never get impacted by the mutation. So the Rase-Score is undesirably influenced (decreased?) by extending and increasing the length of sequence beyond the window size.
The desire mode would be to let the user set a context length for the feature generation.
A less complicated option would be to fix the context length to the window size parameter.
Suppose the scenario where a sequence of length 1000 and window size is set to 200. For a mutation at position say 300, all the graph features above 500 never get impacted by the mutation. So the Rase-Score is undesirably influenced (decreased?) by extending and increasing the length of sequence beyond the window size.
The desire mode would be to let the user set a context length for the feature generation. A less complicated option would be to fix the context length to the window size parameter.