Blocking errors while trying to install kats 0.2.0 (with or without Docker)

[carlok]

Hi, I tried to install the latest version – both minimal and not minimal version – but it ends up with errors.

This is a minimal Dockerfile to try to reproduce the errors.

FROM python:3.9.15-slim
WORKDIR /app
RUN MINIMAL_KATS=1 pip install kats==0.2.0
# alternative => pip install kats==0.2.0

Thank you.

[neelabalan]

Hi. This works for me.

FROM python:3.9.15
WORKDIR /app
RUN MINIMAL_KATS=1 pip install kats==0.2.0

[carlok]

Hi. This works for me.

FROM python:3.9.15
WORKDIR /app
RUN MINIMAL_KATS=1 pip install kats==0.2.0

Thank you but even using your Dockerfile, it still fails here with a log error like

#6 289.1   × python setup.py bdist_wheel did not run successfully.
#6 289.1   │ exit code: 1
#6 289.1   ╰─> [1 lines of output]
#6 289.1       Cython>=0.22 and NumPy are required.
#6 289.1       [end of output]
#6 289.1
#6 289.1   note: This error originates from a subprocess, and is likely not a problem with pip.
#6 289.1   ERROR: Failed building wheel for pystan
#6 289.1   Running setup.py clean for pystan
#6 289.6   Building wheel for pymeeus (setup.py): started
#6 290.2   Building wheel for pymeeus (setup.py): finished with status 'done'

As stated in the log (and according to dependencies of requirements.txt) it should be something not related to pip.

[neelabalan]

Here is the full log which I get

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for fbprophet
  Running setup.py clean for fbprophet
  Building wheel for pystan (setup.py): started
  Building wheel for pystan (setup.py): finished with status 'error'
  error: subprocess-exited-with-error

  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> [1 lines of output]
      Cython>=0.22 and NumPy are required.
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for pystan
  Running setup.py clean for pystan
  Building wheel for pymeeus (setup.py): started
  Building wheel for pymeeus (setup.py): finished with status 'done'
  Created wheel for pymeeus: filename=PyMeeus-0.5.11-py3-none-any.whl size=730985 sha256=471f163d12e1548bf957beebe4110b7ea9de1ba3b803d7f5098f250ce897aa11
  Stored in directory: /root/.cache/pip/wheels/33/3d/82/4579e9cca41ff991140b2e050bc6df3a38292f26e4fa06b15d
Successfully built pymeeus
Failed to build fbprophet pystan
Installing collected packages: setuptools-git, pytz, pymeeus, parameterized, korean-lunar-calendar, iniconfig, ephem, wrapt, typing-extensions, typeguard, tqdm, tomli, threadpoolctl, tenacity, six, pyparsing, pluggy, pillow, numpy, MarkupSafe, llvmlite, kiwisolver, joblib, hijri-converter, fonttools, exceptiongroup, Cython, cycler, convertdate, attrs, torch, scipy, python-dateutil, pystan, plotly, patsy, packaging, numba, multipledispatch, jinja2, deprecated, contourpy, scikit-learn, pytest, pymannkendall, pandas, matplotlib, LunarCalendar, linear-operator, holidays, statsmodels, seaborn, pytest-mpl, gpytorch, cmdstanpy, fbprophet, botorch, ax-platform, kats
  Running setup.py install for pystan: started
  Running setup.py install for pystan: still running...
  Running setup.py install for pystan: finished with status 'done'
  DEPRECATION: pystan was installed using the legacy 'setup.py install' method, because a wheel could not be built for it. A possible replacement is to fix the wheel build issue reported above. Discussion can be found at https://github.com/pypa/pip/issues/8368
  Running setup.py install for fbprophet: started
  Running setup.py install for fbprophet: finished with status 'done'
  DEPRECATION: fbprophet was installed using the legacy 'setup.py install' method, because a wheel could not be built for it. A possible replacement is to fix the wheel build issue reported above. Discussion can be found at https://github.com/pypa/pip/issues/8368
Successfully installed Cython-0.29.32 LunarCalendar-0.0.9 MarkupSafe-2.1.1 attrs-22.1.0 ax-platform-0.2.4 botorch-0.6.2 cmdstanpy-0.9.5 contourpy-1.0.5 convertdate-2.4.0 cycler-0.11.0 deprecated-1.2.13 ephem-4.1.3 exceptiongroup-1.0.0 fbprophet-0.7.1 fonttools-4.38.0 gpytorch-1.9.0 hijri-converter-2.2.4 holidays-0.16 iniconfig-1.1.1 jinja2-3.1.2 joblib-1.2.0 kats-0.2.0 kiwisolver-1.4.4 korean-lunar-calendar-0.3.1 linear-operator-0.1.1 llvmlite-0.39.1 matplotlib-3.6.0 multipledispatch-0.6.0 numba-0.56.3 numpy-1.21.6 packaging-21.3 pandas-1.3.5 parameterized-0.8.1 patsy-0.5.3 pillow-9.2.0 plotly-5.11.0 pluggy-1.0.0 pymannkendall-1.4.2 pymeeus-0.5.11 pyparsing-3.0.9 pystan-2.19.1.1 pytest-7.2.0 pytest-mpl-0.16.1 python-dateutil-2.8.2 pytz-2022.5 scikit-learn-1.1.3 scipy-1.7.3 seaborn-0.12.1 setuptools-git-1.2 six-1.16.0 statsmodels-0.12.2 tenacity-8.1.0 threadpoolctl-3.1.0 tomli-2.0.1 torch-1.12.1 tqdm-4.64.1 typeguard-2.13.3 typing-extensions-4.4.0 wrapt-1.14.1
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
WARNING: You are using pip version 22.0.4; however, version 22.3 is available.
You should consider upgrading via the '/usr/local/bin/python -m pip install --upgrade pip' command.
Removing intermediate container 30edb121f7ac
 ---> ea559a6d281f
Successfully built ea559a6d281f

[carlok]

Unfortunately, my last line is different:

executor failed running [/bin/sh -c MINIMAL_KATS=1 pip install kats==0.2.0]: exit code: 1

Could it be something related to docker environment?

[neelabalan]

Not sure

[carlok]

I don't have an idea at the moment. Could you upload your image somewhere? Thank you anyhow.

[neelabalan]

Sure

[carlok]

Thank you @neelabalan. Let me know.

[neelabalan]

@carlok - https://hub.docker.com/repository/docker/neelabalan/kats

[carlok]

@neelabalan thanks, I'll let you know.

[carlok]

Hi @neelabalan it works, thanks.

[michaelbrundage]

This appears to be an error with the pystan-2.19.1.1 install. If you're still blocked, recommend follow-up with the pystan project.