Closed VaticanCameos99 closed 3 years ago
Seems like your conda environment got corrupted.
Probably best idea is to start with a fresh conda environment.
You could also just trying to install with pip: pip install fair-esm
but the issue may be in one of the dependencies instead.
Hi, thank you for your reply. I did try with pip install, even on a fresh environment, but I see the same error.
Also, not sure if this would work, but I tried accessing the url on the browser (hoping it might download the the zip or redirect me to a parent directory) but that also triggers the same error code.
Hi @VaticanCameos99
This is likely due to an issue when branch names were changed (see here for reference)
PR #138 is underway, but in the mean time, the following code should work for you
model, alphabet = torch.hub.load("facebookresearch/esm:main", "esm1b_t33_650M_UR50S")
Thanks for raising this!
Bug description Please enter a clear and concise description of what the bug is. I tried testing the usage of the library as described in the README.
Reproduction steps installed fair-esm on a conda env as described here: conda install -c conda-forge bio-embeddings-esm
run: By using pytorch hub:
By using esm library:
Expected behavior The download should have been completed and the file(s) should have been at .cache/torch/hub/facebook_research_esm_master . All of this was running perfectly fine a few weeks ago but I decided to reinstall and run. Now I see the 404 error code on trying to download it.
Logs Downloading: "https://github.com/facebookresearch/esm/archive/master.zip" to /home/user/.cache/torch/hub/master.zip Traceback (most recent call last): File "", line 1, in
File "/home/user/anaconda3/envs/myenv/lib/python3.7/site-packages/torch/hub.py", line 345, in load
repo_dir = _get_cache_or_reload(github, force_reload, verbose)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/site-packages/torch/hub.py", line 144, in _get_cache_or_reload
download_url_to_file(url, cached_file, progress=False)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/site-packages/torch/hub.py", line 379, in download_url_to_file
u = urlopen(req)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 531, in open
response = meth(req, response)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 641, in http_response
'http', request, response, code, msg, hdrs)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 563, in error
result = self._call_chain(args)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 503, in _call_chain
result = func(args)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 755, in http_error_302
return self.parent.open(new, timeout=req.timeout)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 531, in open
response = meth(req, response)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 641, in http_response
'http', request, response, code, msg, hdrs)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 569, in error
return self._call_chain(args)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 503, in _call_chain
result = func(args)
File "/home/user/anaconda3/envs/myenv/lib/python3.7/urllib/request.py", line 649, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
Additional notes: trying to load any other pretrained model from this repo also gives the same result