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facebookresearch / esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins
MIT License
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Repo reshuffle #186

Closed tomsercu closed 2 years ago

tomsercu commented 2 years ago

Cleaning up and some general updating, the root of the repo now contains

esm  <- core package of course
examples/ <- notebooks, and subdirs specific to paper releases
 |- data/
 |- variant-prediction/
 |- inverse_folding/
scripts/
tests/

cc @chloechsu - as ESM-IF was released with this structure in mind.

rmrao commented 2 years ago

I think this will change the URLs for the MSAs, which I'm downloading for the new notebook script. So once this gets merged, I'll grab the new URLs, make sure it works with the colab, and submit a PR for that.

rmrao commented 2 years ago

Actually I'm just gonna merge this myself so I can submit the notebook PR.