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facebookresearch / esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins
MIT License
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No module named 'openfold' #336

Closed yesols closed 1 year ago

yesols commented 1 year ago

Hello! When I tried to run scripts/esmfold_inference.py, I got this error: 

  File "/Users/yesol/opt/anaconda3/envs/ml/lib/python3.9/site-packages/esm/esmfold/v1/esmfold.py", line 11, in <module>
    from openfold.data.data_transforms import make_atom14_masks
ModuleNotFoundError: No module named 'openfold'

I found github page for OpenFold. Do I need to install this first? If so, did I miss this somehow in the installation instruction? Or can I just copy their data_transforms.py script if this is the only part used in ESM?

Thank you very much.

JasperGeissler commented 1 year ago

Hello,

May I ask how you found the solution to your problem? I'm struggling with a very similar problem. Thanks in advance!

yesols commented 1 year ago

Hi @JasperGeissler , It was a hardware issue in my case. I simply realized that my computer was not CUDA-compatible which was mentioned in the installation instruction but I overlooked it. I ended up using the colab environment.