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facebookresearch / esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins
MIT License
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Upload 0.3.0 on pypi? #45

Closed hadim closed 3 years ago

hadim commented 3 years ago

See title.

That would be useful for the conda-forge package

hadim commented 3 years ago

See https://github.com/conda-forge/bio-embeddings-esm-feedstock

tomsercu commented 3 years ago

We will start building and publishing to pypi, pending resolution of https://github.com/pypa/pypi-support/issues/936 In the meantime, you can install with pip install git+https://github.com/facebookresearch/esm.git or use torch hub. Will update once it's published

ashrafgt commented 3 years ago

Thank you @tomsercu

This is very important for cases where we want to publish a package that uses esm as a dependency, and using the esm @ git+https://github.com/facebookresearch/esm.git format works for installing locally, but doesn't work when uploading to pypi with twine (see issue)

If possible, we'll push a temp version of the package to pypi to progress on our project while we await the official version typ be available.

tomsercu commented 3 years ago

Yeah, things don't look too promising on the pypi issue to be resolved anytime soon. To unblock this, for now we've just published under a different name (could revise when pypi name esm gets reassigned). Behold:

pip install fair-esm

Let us know if that works for you! cc @konstin @hadim @ashrafgt

tomsercu commented 3 years ago

I'll close this for now but will provide updates if we get the project name released and can switch over pip install esm :)

tomsercu commented 3 years ago

And backported the fair-esm name to the old releases as well on pypi. pypi has now a complete history matching the tags here on github.

konstin commented 3 years ago

Thanks! I've migrated bio-embeddings to fair-esm and it works flawlessly