when i use esm_contact_prediction.ipynb ,it has a ' ModuleNotFoundError '

facebookresearch / esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

MIT License

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when i use esm_contact_prediction.ipynb ,it has a ' ModuleNotFoundError ' #517

Closed 313king closed 1 year ago

313king commented 1 year ago

ModuleNotFoundError Traceback (most recent call last) in <cell line: 12>() 10 import matplotlib.pyplot as plt 11 import matplotlib as mpl ---> 12 from Bio import SeqIO 13 import biotite.structure as bs 14 from biotite.structure.io.pdbx import PDBxFile, get_structure

ModuleNotFoundError: No module named 'Bio'

tomsercu commented 1 year ago

It should be run in an environment that has BioPython and the other dependencies installed.

313king commented 1 year ago

thank you ! But when i download model weights ,it will show 'download aborted'

tomsercu commented 1 year ago

Try it from a different machine? This is definitely a problem specific to your environment. See frontpage README instructions for advice on setting up your environment.