MaoSihong
commented
1 year ago as you can see, there are no openfold on your local machine as esm-fold dependancy
Open amoroso2 opened 1 year ago
MaoSihong
commented
1 year ago as you can see, there are no openfold on your local machine as esm-fold dependancy
I really appreciate ESMfold in this field. I was able to run my python file without any problem of installing 'openfold'. However, when I executed esm-fold using my fasta file by command line, I ended up with "ModuleNotFoundError: No module named 'openfold'" as follow. I would be very grateful to any suggestions to solve this issue. Thank you very much for your help in advance.
(esmfold) administrator@XXXXX:~/esm$ esm-fold -i ~/esm/test_sequence.fasta -o ~/esm/ --chunk-size 32 23/04/07 20:28:17 | INFO | root | Reading sequences from /home/administrator/esm/test_sequence.fasta 23/04/07 20:28:17 | INFO | root | Loaded 1 sequences from /home/administrator/esm/test_sequence.fasta 23/04/07 20:28:17 | INFO | root | Loading model Traceback (most recent call last): File "/home/administrator/.local/bin/esm-fold", line 8, in
sys.exit(main())
File "/home/administrator/.local/lib/python3.8/site-packages/esm/scripts/fold.py", line 197, in main
run(args)
File "/home/administrator/.local/lib/python3.8/site-packages/esm/scripts/fold.py", line 138, in run
model = esm.pretrained.esmfold_v1()
File "/home/administrator/.local/lib/python3.8/site-packages/esm/pretrained.py", line 419, in esmfold_v1
import esm.esmfold.v1.pretrained
File "/home/administrator/.local/lib/python3.8/site-packages/esm/esmfold/v1/pretrained.py", line 5, in
from esm.esmfold.v1.esmfold import ESMFold
File "/home/administrator/.local/lib/python3.8/site-packages/esm/esmfold/v1/esmfold.py", line 17, in
from esm.esmfold.v1.misc import (
File "/home/administrator/.local/lib/python3.8/site-packages/esm/esmfold/v1/misc.py", line 12, in
from openfold.np import residue_constants
ModuleNotFoundError: No module named 'openfold'