facebookresearch / esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins
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Error when predicting contacts for heterodimer #674

Open AnjaliSetiya opened 2 months ago

AnjaliSetiya commented 2 months ago

I am trying to follow the tutorial on contact prediction from esm example files https://github.com/facebookresearch/esm/blob/main/examples/contact_prediction.ipynb but i have some multimeric proteins also, as there is not much info available for those, i follow the steps as mentioned for esmfold that is to use a ':' seperator. Screenshot from 2024-04-08 17-54-36. But when trying to predict contacts Screenshot from 2024-04-08 17-57-13. It doesn't accept the seperator, Let me know how do we predict contact probablities,/contact predictions for multimeric proteins. how should fasta be given for the same.