search

facebookresearch / fastMRI

A large-scale dataset of both raw MRI measurements and clinical MRI images.
https://fastmri.org
MIT License
1.34k stars 373 forks source link

Issue running pytest #41

Closed adithyaOvGu closed 4 years ago

adithyaOvGu commented 4 years ago

I am a first time user of Bart and the FastMRI repo. I followed the instructions and installed BART successfully and when I run "pytest" what are the input arguments to be passed?

I get the follwing erros: "with open(sys.argv[1], 'r') as fd: IndexError: list index out of range" "ERROR bart/tests/pyBART_run_test.py - NameError: name 'line' is not defined"

I kindly request you to let me know where i am going wrong. Thanks in advance.

mmuckley commented 4 years ago

Hello, this is not one of our tests. You might have installed the BART toolbox in the same folder that you have the fastMRI repository, in which case pytest will find the BART tests and run them without the appropriate arguments. I'd recommend moving the BART toolbox outside the repository and then rerunning pytest.

If you still want to run this test and are having issues, I'd recommend asking on the BART GitHub.

https://github.com/mrirecon/bart

adithyaOvGu commented 4 years ago

@mmuckley Thank you for the quick response. That's exactly what I was doing, installed the BART toolbox in the same folder that has the fastMRI repository because "run_bart_test.py" and "run_bart_val.py" were calling module "bart". When I installed bart outside the repo dir, pytest works. Thank you very much and I will consider this issue closed.