Error in generating binary.jar file from PDF-FIGURES2

[hmhm1190]

I am trying to generate dataset. I completed all the three steps under dataset generation, but it gives error as:

You need to configure the path to the pdffigures2 executable in this file (nougat/dataset/pdffigures.py) or set the environment variable 'PDFFIGURES_PATH'.
Namespace(dpi=96, figure=PosixPath('/home/patidarritesh/Nougat/nougat/path/figures'), html=PosixPath('/home/patidarritesh/Nougat/nougat/scr_html'), markdown=None, out=PosixPath('/home/patidarritesh/Nougat/nougat/path/paired'), pdfs=PosixPath('/home/patidarritesh/Nougat/nougat/Pdfs'), recompute=False, tesseract=False, timeout=120, workers=48)
  0%|                                                                                                                        | 0/4 [00:00<?, ?it/s]INFO:root:2301.00001 is faulty
INFO:root:2301.00002 is faulty
 50%|████████████████████████████████████████████████████████                                                        | 2/4 [00:00<00:00, 16.73it/s]INFO:root:2301.00005 is faulty
INFO:root:2301.00003 is faulty
100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 4/4 [00:00<00:00, 33.25it/s]

I encountered following error in binary.jar generation, so generated jar file may be corrupted because: Upon checking, every other command is also giving this error other than SBT ASSEMBLY

The command(and all other commands too) sbt "runMain org.allenai.pdffigures2.FigureExtractorVisualizationCli /path/to/pdf" gives error and I believe that the binary.jar file that I am using may be corrupted due to these errors:

[info] Updated file /home/husainmalwat/nougat/nougat/project/build.properties: set sbt.version to 1.4.9
[info] welcome to sbt 1.4.9 (Red Hat, Inc. Java 1.8.0_382)
[info] loading project definition from /home/husainmalwat/nougat/nougat/project
[info] set current project to nougat (in build file:/home/husainmalwat/nougat/nougat/)
[info] running org.allenai.pdffigures2.FigureExtractorVisualizationCli /home/husainmalwat/src_pdf
[error] (run-main-0) java.lang.ClassNotFoundException: org.allenai.pdffigures2.FigureExtractorVisualizationCli
[error] java.lang.ClassNotFoundException: org.allenai.pdffigures2.FigureExtractorVisualizationCli
[error]         at java.net.URLClassLoader.findClass(URLClassLoader.java:387)
[error] stack trace is suppressed; run last Compile / bgRunMain for the full output
[error] Nonzero exit code: 1
[error] (Compile / runMain) Nonzero exit code: 1
[error] Total time: 1 s, completed 11 Nov, 2023 1:04:59 AM

[CHENG-EMMA1]

Hi, I would like to ask if you solved the problem, and then the markdown of the data you generated has tables and images? It seems like they are all omitted?

[hmhm1190]

Hii Thanks for replying I had errors in setup so I was not getting tables...

Now it's working fine.

Regards and Thanks Husain Malwat

On Thu, Mar 14, 2024, 9:46 AM Cheng Hiuyi @.***> wrote:

Hi, I would like to ask if you solved the problem, and then the markdown of the data you generated has tables and images? It seems like they are all omitted?

— Reply to this email directly, view it on GitHub https://github.com/facebookresearch/nougat/issues/172#issuecomment-1996370630, or unsubscribe https://github.com/notifications/unsubscribe-auth/AZOPDDKVH2DVQJXD4MUI5ATYYEQCHAVCNFSM6AAAAAA7GT465WVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSOJWGM3TANRTGA . You are receiving this because you authored the thread.Message ID: @.***>

[CHENG-EMMA1]

Thanks for your reply. The data I converted, if it contains tables, the .mmd file doesn't seem to contain the table information at the end. Do you have the same problem?