facebookresearch / pytext

A natural language modeling framework based on PyTorch
https://pytext.readthedocs.io/en/master/
Other
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Pytext segfaults when running the example #240

Open erip opened 5 years ago

erip commented 5 years ago

Steps to reproduce

  1. git clone git@github.com:facebookresearch/pytext.git
  2. conda create -n pytext -y
  3. conda activate pytext
  4. conda intall pip
  5. pip install pytext-nlp
  6. cd pytext
  7. pytext train < demo/configs/docnn.json
  8. pytext test < demo/configs/docnn.json
  9. pytext export --output-path exported_model.c2 < demo/configs/docnn.json

Observed Results

(pytext) ➜  pytext git:(master) ✗ pytext export --output-path exported_model.c2 < demo/configs/docnn.json
No config file specified, reading from stdin
Exporting /tmp/model.pt to caffe2 file: exported_model.c2 and onnx file: /tmp/model.onnx
Loading model from /tmp/model.pt...
Task parameters:

{'data_handler': {'columns_to_read': ['doc_label', 'text', 'dict_feat'],
                  'eval_batch_size': 128,
                  'eval_path': 'tests/data/test_data_tiny.tsv',
                  'max_seq_len': -1,
                  'shuffle': True,
                  'sort_within_batch': True,
                  'test_batch_size': 128,
                  'test_path': 'tests/data/test_data_tiny.tsv',
                  'train_batch_size': 128,
                  'train_path': 'tests/data/train_data_tiny.tsv'},
 'exporter': None,
 'features': {'char_feat': None,
              'dense_feat': None,
              'dict_feat': None,
              'freeze': False,
              'load_path': None,
              'pretrained_model_embedding': None,
              'save_path': None,
              'shared_module_key': None,
              'word_feat': {'embed_dim': 100,
                            'embedding_init_range': None,
                            'embedding_init_strategy': 'random',
                            'export_input_names': ['tokens_vals'],
                            'freeze': False,
                            'lowercase_tokens': True,
                            'min_freq': 1,
                            'mlp_layer_dims': [],
                            'pretrained_embeddings_path': '',
                            'vocab_file': '',
                            'vocab_from_all_data': False,
                            'vocab_from_pretrained_embeddings': False,
                            'vocab_from_train_data': True,
                            'vocab_size': 0}},
 'featurizer': {'SimpleFeaturizer': {'convert_to_bytes': False,
                                     'lowercase_tokens': True,
                                     'sentence_markers': None,
                                     'split_regex': '\\s+'}},
 'labels': {'export_output_names': ['doc_scores'],
            'label_weights': {},
            'target_prob': False},
 'metric_reporter': {'output_path': '/tmp/test_out.txt'},
 'model': {'decoder': {'freeze': False,
                       'hidden_dims': [],
                       'load_path': None,
                       'save_path': None,
                       'shared_module_key': None},
           'output_layer': {'freeze': False,
                            'load_path': None,
                            'loss': {'CrossEntropyLoss': {}},
                            'save_path': None,
                            'shared_module_key': None},
           'representation': {'BiLSTMDocAttention': {'dropout': 0.4,
                                                     'freeze': False,
                                                     'load_path': None,
                                                     'lstm': {'bidirectional': True,
                                                              'dropout': 0.4,
                                                              'freeze': False,
                                                              'load_path': None,
                                                              'lstm_dim': 32,
                                                              'num_layers': 1,
                                                              'save_path': None,
                                                              'shared_module_key': None},
                                                     'mlp_decoder': None,
                                                     'pooling': {'SelfAttention': {'attn_dimension': 64,
                                                                                   'dropout': 0.4}},
                                                     'save_path': None,
                                                     'shared_module_key': None}}},
 'optimizer': {'lr': 0.001,
               'momentum': 0.0,
               'type': 'adam',
               'weight_decay': 1e-05},
 'scheduler': {'T_max': 1000,
               'cooldown': 0,
               'cut_frac': 0.1,
               'eta_min': 0.0,
               'gamma': 0.1,
               'lm_gradual_unfreezing': True,
               'lm_lr_multiplier': 1.0,
               'lm_use_per_layer_lr': False,
               'non_pretrained_param_groups': 2,
               'patience': 5,
               'ratio': 32,
               'step_size': 30,
               'threshold': 0.0001,
               'threshold_is_absolute': False,
               'type': 'none'},
 'trainer': {'early_stop_after': 0,
             'epochs': 10,
             'max_clip_norm': None,
             'random_seed': 0,
             'report_train_metrics': True}}
creating field TextFeatureField
creating field DocLabelField

Loading data...
load_path is not a config of embedding, skipping
save_path is not a config of embedding, skipping
freeze is not a config of embedding, skipping
shared_module_key is not a config of embedding, skipping
dict_feat is not a config of embedding, skipping
char_feat is not a config of embedding, skipping
pretrained_model_embedding is not a config of embedding, skipping
dense_feat is not a config of embedding, skipping
Model has 2 param groups (1 from embedding module) for optimizer
Saving caffe2 model to: exported_model.c2
Saving onnx model to: /tmp/model.onnx
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/nn/modules/module.py:487: UserWarning: Implicit dimension choice for softmax has been deprecated. Change the call to include dim=X as an argument.
  result = self._slow_forward(*input, **kwargs)
*** Error in `/data/erippeth/anaconda3/envs/pytext/bin/python': free(): invalid pointer: 0x00007ffd338d6368 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x81489)[0x7f1473a2c489]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0xe3155)[0x7f145c7fd155]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0x78004)[0x7f145c792004]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0xe8c67)[0x7f145c802c67]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0xe9fb4)[0x7f145c803fb4]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0xe4365)[0x7f145c7fe365]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0xeb315)[0x7f145c805315]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0x48e3e)[0x7f145c762e3e]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0x49b33)[0x7f145c763b33]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0x4b7d3)[0x7f145c7657d3]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0x4c7b6)[0x7f145c7667b6]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0x206f3)[0x7f145c73a6f3]
/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/onnx/onnx_cpp2py_export.cpython-37m-x86_64-linux-gnu.so(+0x3a86e)[0x7f145c75486e]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyMethodDef_RawFastCallKeywords+0x264)[0x55eaaf232e24]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyCFunction_FastCallKeywords+0x21)[0x55eaaf232f41]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x4e06)[0x55eaaf28d8c6]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallKeywords+0xfb)[0x55eaaf231ecb]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x4aa1)[0x55eaaf28d561]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x2f9)[0x55eaaf1ce0d9]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallKeywords+0x325)[0x55eaaf2320f5]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x4aa1)[0x55eaaf28d561]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x2f9)[0x55eaaf1ce0d9]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallKeywords+0x325)[0x55eaaf2320f5]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x530)[0x55eaaf288ff0]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x2f9)[0x55eaaf1ce0d9]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallKeywords+0x387)[0x55eaaf232157]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x14e1)[0x55eaaf289fa1]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x2f9)[0x55eaaf1ce0d9]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallKeywords+0x325)[0x55eaaf2320f5]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x6e6)[0x55eaaf2891a6]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x2f9)[0x55eaaf1ce0d9]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallDict+0x3dc)[0x55eaaf1cf3bc]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x1f3f)[0x55eaaf28a9ff]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x5da)[0x55eaaf1ce3ba]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallDict+0x3dc)[0x55eaaf1cf3bc]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x1f3f)[0x55eaaf28a9ff]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x2f9)[0x55eaaf1ce0d9]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallDict+0x3dc)[0x55eaaf1cf3bc]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyObject_Call_Prepend+0x63)[0x55eaaf1e6473]
/data/erippeth/anaconda3/envs/pytext/bin/python(PyObject_Call+0x6e)[0x55eaaf1db19e]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x1f3f)[0x55eaaf28a9ff]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallKeywords+0xfb)[0x55eaaf231ecb]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x530)[0x55eaaf288ff0]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0xab9)[0x55eaaf1ce899]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallKeywords+0x387)[0x55eaaf232157]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x530)[0x55eaaf288ff0]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x2f9)[0x55eaaf1ce0d9]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallDict+0x1d4)[0x55eaaf1cf1b4]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyObject_Call_Prepend+0x63)[0x55eaaf1e6473]
/data/erippeth/anaconda3/envs/pytext/bin/python(PyObject_Call+0x6e)[0x55eaaf1db19e]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x1f3f)[0x55eaaf28a9ff]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x2f9)[0x55eaaf1ce0d9]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyFunction_FastCallDict+0x1d4)[0x55eaaf1cf1b4]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyObject_Call_Prepend+0x63)[0x55eaaf1e6473]
/data/erippeth/anaconda3/envs/pytext/bin/python(+0x17194a)[0x55eaaf22a94a]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyObject_FastCallKeywords+0x49b)[0x55eaaf23346b]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalFrameDefault+0x4b86)[0x55eaaf28d646]
/data/erippeth/anaconda3/envs/pytext/bin/python(_PyEval_EvalCodeWithName+0x2f9)[0x55eaaf1ce0d9]
/data/erippeth/anaconda3/envs/pytext/bin/python(PyEval_EvalCodeEx+0x44)[0x55eaaf1cefa4]
/data/erippeth/anaconda3/envs/pytext/bin/python(PyEval_EvalCode+0x1c)[0x55eaaf1cefcc]
/data/erippeth/anaconda3/envs/pytext/bin/python(+0x22f664)[0x55eaaf2e8664]
/data/erippeth/anaconda3/envs/pytext/bin/python(PyRun_FileExFlags+0xa1)[0x55eaaf2f2881]
/data/erippeth/anaconda3/envs/pytext/bin/python(PyRun_SimpleFileExFlags+0x1c3)[0x55eaaf2f2a73]
======= Memory map: ========
55eaaf0b9000-55eaaf114000 r--p 00000000 00:2c 433809370732               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/bin/python3.7
55eaaf114000-55eaaf2f4000 r-xp 0005b000 00:2c 433809370732               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/bin/python3.7
55eaaf2f4000-55eaaf39b000 r--p 0023b000 00:2c 433809370732               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/bin/python3.7
55eaaf39c000-55eaaf39f000 r--p 002e2000 00:2c 433809370732               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/bin/python3.7
55eaaf39f000-55eaaf408000 rw-p 002e5000 00:2c 433809370732               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/bin/python3.7
55eaaf408000-55eaaf429000 rw-p 00000000 00:00 0
55eaaf438000-55eab0d49000 rw-p 00000000 00:00 0                          [heap]
7f13c4000000-7f13c4021000 rw-p 00000000 00:00 0
7f13c4021000-7f13c8000000 ---p 00000000 00:00 0
7f13c9a23000-7f13cae4d000 r-xp 00000000 00:2c 502558114865               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libnvrtc-007d19c9.so.9.0
7f13cae4d000-7f13cb04c000 ---p 0142a000 00:2c 502558114865               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libnvrtc-007d19c9.so.9.0
7f13cb04c000-7f13cb1f6000 rw-p 01429000 00:2c 502558114865               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libnvrtc-007d19c9.so.9.0
7f13cb1f6000-7f13cb26e000 rw-p 00000000 00:00 0
7f13cb26e000-7f13cb270000 rw-p 015d3000 00:2c 502558114865               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libnvrtc-007d19c9.so.9.0
7f13cb270000-7f13cb2df000 r-xp 00000000 00:2c 502511627280               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libc10_cuda.so
7f13cb2df000-7f13cb4de000 ---p 0006f000 00:2c 502511627280               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libc10_cuda.so
7f13cb4de000-7f13cb4e1000 r--p 0006e000 00:2c 502511627280               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libc10_cuda.so
7f13cb4e1000-7f13cb4e2000 rw-p 00071000 00:2c 502511627280               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libc10_cuda.so
7f13cb4e2000-7f13cb4e3000 rw-p 00000000 00:00 0
7f13cb4e3000-7f13cb508000 r-xp 00000000 00:2c 502516781629               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libgomp-7bcb08ae.so.1
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7f13cb707000-7f13cb708000 r--p 00024000 00:2c 502516781629               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libgomp-7bcb08ae.so.1
7f13cb708000-7f13cb70d000 rw-p 00025000 00:2c 502516781629               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libgomp-7bcb08ae.so.1
7f13cb70d000-7f13cb776000 r-xp 00000000 00:2c 502558114869               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libcudart-f7fdd8d7.so.9.0
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7f13cb975000-7f13cb979000 rw-p 00068000 00:2c 502558114869               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libcudart-f7fdd8d7.so.9.0
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7f13cb97a000-7f13cb97d000 rw-p 0006d000 00:2c 502558114869               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libcudart-f7fdd8d7.so.9.0
7f13cb97d000-7f13cbefb000 r-xp 00000000 00:2c 502558114864               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libmkldnn.so.0
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7f13cc0fa000-7f13cc123000 r--p 0057d000 00:2c 502558114864               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libmkldnn.so.0
7f13cc123000-7f13cc124000 rw-p 005a6000 00:2c 502558114864               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libmkldnn.so.0
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7f13cc132000-7f13cc14f000 r-xp 00000000 00:2c 502558114875               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libc10.so
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7f13cc34f000-7f13cc350000 r--p 0001d000 00:2c 502558114875               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libc10.so
7f13cc350000-7f13cc351000 rw-p 0001e000 00:2c 502558114875               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libc10.so
7f13cc351000-7f13cc352000 rw-p 00000000 00:00 0
7f13cc352000-7f13f9841000 r-xp 00000000 00:2c 502558114867               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libcaffe2_gpu.so
7f13f9841000-7f13f9a40000 ---p 2d4ef000 00:2c 502558114867               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libcaffe2_gpu.so
7f13f9a40000-7f13f9b5f000 r--p 2d4ee000 00:2c 502558114867               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/site-packages/torch/lib/libcaffe2_gpu.so
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7f146ca2d000-7f146ca2e000 r--p 00011000 00:2c 485358296616               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_json.cpython-37m-x86_64-linux-gnu.so
7f146ca2e000-7f146ca2f000 rw-p 00012000 00:2c 485358296616               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_json.cpython-37m-x86_64-linux-gnu.so
7f146ca2f000-7f146cb70000 rw-p 00000000 00:00 0
7f146cb70000-7f147309a000 r--p 00000000 09:05 790475                     /usr/lib/locale/locale-archive
7f147309a000-7f147319b000 r-xp 00000000 09:05 393293                     /usr/lib64/libm-2.17.so
7f147319b000-7f147339a000 ---p 00101000 09:05 393293                     /usr/lib64/libm-2.17.so
7f147339a000-7f147339b000 r--p 00100000 09:05 393293                     /usr/lib64/libm-2.17.so
7f147339b000-7f147339c000 rw-p 00101000 09:05 393293                     /usr/lib64/libm-2.17.so
7f147339c000-7f14733a3000 r-xp 00000000 09:05 393315                     /usr/lib64/librt-2.17.so
7f14733a3000-7f14735a2000 ---p 00007000 09:05 393315                     /usr/lib64/librt-2.17.so
7f14735a2000-7f14735a3000 r--p 00006000 09:05 393315                     /usr/lib64/librt-2.17.so
7f14735a3000-7f14735a4000 rw-p 00007000 09:05 393315                     /usr/lib64/librt-2.17.so
7f14735a4000-7f14735a6000 r-xp 00000000 09:05 393319                     /usr/lib64/libutil-2.17.so
7f14735a6000-7f14737a5000 ---p 00002000 09:05 393319                     /usr/lib64/libutil-2.17.so
7f14737a5000-7f14737a6000 r--p 00001000 09:05 393319                     /usr/lib64/libutil-2.17.so
7f14737a6000-7f14737a7000 rw-p 00002000 09:05 393319                     /usr/lib64/libutil-2.17.so
7f14737a7000-7f14737a9000 r-xp 00000000 09:05 393291                     /usr/lib64/libdl-2.17.so
7f14737a9000-7f14739a9000 ---p 00002000 09:05 393291                     /usr/lib64/libdl-2.17.so
7f14739a9000-7f14739aa000 r--p 00002000 09:05 393291                     /usr/lib64/libdl-2.17.so
7f14739aa000-7f14739ab000 rw-p 00003000 09:05 393291                     /usr/lib64/libdl-2.17.so
7f14739ab000-7f1473b6d000 r-xp 00000000 09:05 393285                     /usr/lib64/libc-2.17.so
7f1473b6d000-7f1473d6d000 ---p 001c2000 09:05 393285                     /usr/lib64/libc-2.17.so
7f1473d6d000-7f1473d71000 r--p 001c2000 09:05 393285                     /usr/lib64/libc-2.17.so
7f1473d71000-7f1473d73000 rw-p 001c6000 09:05 393285                     /usr/lib64/libc-2.17.so
7f1473d73000-7f1473d78000 rw-p 00000000 00:00 0
7f1473d78000-7f1473d8f000 r-xp 00000000 09:05 393311                     /usr/lib64/libpthread-2.17.so
7f1473d8f000-7f1473f8e000 ---p 00017000 09:05 393311                     /usr/lib64/libpthread-2.17.so
7f1473f8e000-7f1473f8f000 r--p 00016000 09:05 393311                     /usr/lib64/libpthread-2.17.so
7f1473f8f000-7f1473f90000 rw-p 00017000 09:05 393311                     /usr/lib64/libpthread-2.17.so
7f1473f90000-7f1473f94000 rw-p 00000000 00:00 0
7f1473f94000-7f1473fb6000 r-xp 00000000 09:05 393278                     /usr/lib64/ld-2.17.so
7f1473fb6000-7f1473fb7000 r--p 00000000 00:2c 485357796415               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_bisect.cpython-37m-x86_64-linux-gnu.so
7f1473fb7000-7f1473fb8000 r-xp 00001000 00:2c 485357796415               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_bisect.cpython-37m-x86_64-linux-gnu.so
7f1473fb8000-7f1473fb9000 r--p 00002000 00:2c 485357796415               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_bisect.cpython-37m-x86_64-linux-gnu.so
7f1473fb9000-7f1473fba000 r--p 00002000 00:2c 485357796415               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_bisect.cpython-37m-x86_64-linux-gnu.so
7f1473fba000-7f1473fbb000 rw-p 00003000 00:2c 485357796415               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_bisect.cpython-37m-x86_64-linux-gnu.so
7f1473fbb000-7f1473fbc000 rwxp 00000000 00:00 0
7f1473fbc000-7f1473fbd000 r--p 00000000 00:2c 485358251572               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_heapq.cpython-37m-x86_64-linux-gnu.so
7f1473fbd000-7f1473fbf000 r-xp 00001000 00:2c 485358251572               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_heapq.cpython-37m-x86_64-linux-gnu.so
7f1473fbf000-7f1473fc0000 r--p 00003000 00:2c 485358251572               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_heapq.cpython-37m-x86_64-linux-gnu.so
7f1473fc0000-7f1473fc1000 r--p 00003000 00:2c 485358251572               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_heapq.cpython-37m-x86_64-linux-gnu.so
7f1473fc1000-7f1473fc3000 rw-p 00004000 00:2c 485358251572               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_heapq.cpython-37m-x86_64-linux-gnu.so
7f1473fc3000-7f1474188000 rw-p 00000000 00:00 0
7f1474188000-7f1474190000 r--p 00000000 00:2c 433809370747               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_ctypes.cpython-37m-x86_64-linux-gnu.so
7f1474190000-7f14741a1000 r-xp 00008000 00:2c 433809370747               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_ctypes.cpython-37m-x86_64-linux-gnu.so
7f14741a1000-7f14741a8000 r--p 00019000 00:2c 433809370747               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_ctypes.cpython-37m-x86_64-linux-gnu.so
7f14741a8000-7f14741a9000 r--p 0001f000 00:2c 433809370747               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_ctypes.cpython-37m-x86_64-linux-gnu.so
7f14741a9000-7f14741ad000 rw-p 00020000 00:2c 433809370747               /autofs/nas1/data/erippeth/anaconda3/envs/pytext/lib/python3.7/lib-dynload/_ctypes.cpython-37m-x86_64-linux-gnu.so
7f14741ad000-7f14741b4000 r--s 00000000 09:05 393577                     /usr/lib64/gconv/gconv-modules.cache
7f14741b4000-7f14741b5000 rw-p 00000000 00:00 0
7f14741b5000-7f14741b6000 r--p 00021000 09:05 393278                     /usr/lib64/ld-2.17.so
7f14741b6000-7f14741b7000 rw-p 00022000 09:05 393278                     /usr/lib64/ld-2.17.so
7f14741b7000-7f14741b8000 rw-p 00000000 00:00 0
7ffd338b1000-7ffd338db000 rw-p 00000000 00:00 0                          [stack]
7ffd339ca000-7ffd339cc000 r-xp 00000000 00:00 0                          [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
[1]    20013 abort (core dumped)  pytext export --output-path exported_model.c2 < demo/configs/docnn.json

Expected Results

erip commented 5 years ago

Downgrading to Python 3.6 yields:

(pytext) ➜  pytext git:(master) ✗ pytext export --output-path exported_model.c2 < demo/configs/docnn.json
No config file specified, reading from stdin
Exporting /tmp/model.pt to caffe2 file: exported_model.c2 and onnx file: /tmp/model.onnx
Loading model from /tmp/model.pt...
Task parameters:

{'data_handler': {'columns_to_read': ['doc_label', 'text', 'dict_feat'],
                  'eval_batch_size': 128,
                  'eval_path': 'tests/data/test_data_tiny.tsv',
                  'max_seq_len': -1,
                  'shuffle': True,
                  'sort_within_batch': True,
                  'test_batch_size': 128,
                  'test_path': 'tests/data/test_data_tiny.tsv',
                  'train_batch_size': 128,
                  'train_path': 'tests/data/train_data_tiny.tsv'},
 'exporter': None,
 'features': {'char_feat': None,
              'dense_feat': None,
              'dict_feat': None,
              'freeze': False,
              'load_path': None,
              'pretrained_model_embedding': None,
              'save_path': None,
              'shared_module_key': None,
              'word_feat': {'embed_dim': 100,
                            'embedding_init_range': None,
                            'embedding_init_strategy': 'random',
                            'export_input_names': ['tokens_vals'],
                            'freeze': False,
                            'lowercase_tokens': True,
                            'min_freq': 1,
                            'mlp_layer_dims': [],
                            'pretrained_embeddings_path': '',
                            'vocab_file': '',
                            'vocab_from_all_data': False,
                            'vocab_from_pretrained_embeddings': False,
                            'vocab_from_train_data': True,
                            'vocab_size': 0}},
 'featurizer': {'SimpleFeaturizer': {'convert_to_bytes': False,
                                     'lowercase_tokens': True,
                                     'sentence_markers': None,
                                     'split_regex': '\\s+'}},
 'labels': {'export_output_names': ['doc_scores'],
            'label_weights': {},
            'target_prob': False},
 'metric_reporter': {'output_path': '/tmp/test_out.txt'},
 'model': {'decoder': {'freeze': False,
                       'hidden_dims': [],
                       'load_path': None,
                       'save_path': None,
                       'shared_module_key': None},
           'output_layer': {'freeze': False,
                            'load_path': None,
                            'loss': {'CrossEntropyLoss': {}},
                            'save_path': None,
                            'shared_module_key': None},
           'representation': {'BiLSTMDocAttention': {'dropout': 0.4,
                                                     'freeze': False,
                                                     'load_path': None,
                                                     'lstm': {'bidirectional': True,
                                                              'dropout': 0.4,
                                                              'freeze': False,
                                                              'load_path': None,
                                                              'lstm_dim': 32,
                                                              'num_layers': 1,
                                                              'save_path': None,
                                                              'shared_module_key': None},
                                                     'mlp_decoder': None,
                                                     'pooling': {'SelfAttention': {'attn_dimension': 64,
                                                                                   'dropout': 0.4}},
                                                     'save_path': None,
                                                     'shared_module_key': None}}},
 'optimizer': {'lr': 0.001,
               'momentum': 0.0,
               'type': 'adam',
               'weight_decay': 1e-05},
 'scheduler': {'T_max': 1000,
               'cooldown': 0,
               'cut_frac': 0.1,
               'eta_min': 0.0,
               'gamma': 0.1,
               'lm_gradual_unfreezing': True,
               'lm_lr_multiplier': 1.0,
               'lm_use_per_layer_lr': False,
               'non_pretrained_param_groups': 2,
               'patience': 5,
               'ratio': 32,
               'step_size': 30,
               'threshold': 0.0001,
               'threshold_is_absolute': False,
               'type': 'none'},
 'trainer': {'early_stop_after': 0,
             'epochs': 10,
             'max_clip_norm': None,
             'random_seed': 0,
             'report_train_metrics': True}}
creating field TextFeatureField
creating field DocLabelField

Loading data...
load_path is not a config of embedding, skipping
save_path is not a config of embedding, skipping
freeze is not a config of embedding, skipping
shared_module_key is not a config of embedding, skipping
dict_feat is not a config of embedding, skipping
char_feat is not a config of embedding, skipping
pretrained_model_embedding is not a config of embedding, skipping
dense_feat is not a config of embedding, skipping
Model has 2 param groups (1 from embedding module) for optimizer
Saving caffe2 model to: exported_model.c2
Saving onnx model to: /tmp/model.onnx
/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/torch/nn/modules/module.py:487: UserWarning: Implicit dimension choice for softmax has been deprecated. Change the call to include dim=X as an argument.
  result = self._slow_forward(*input, **kwargs)
Traceback (most recent call last):
  File "/data/erippeth/anaconda3/envs/pytext/bin/pytext", line 11, in <module>
    sys.exit(main())
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/click/core.py", line 764, in __call__
    return self.main(*args, **kwargs)
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/click/core.py", line 717, in main
    rv = self.invoke(ctx)
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/click/core.py", line 1137, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/click/core.py", line 956, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/click/decorators.py", line 17, in new_func
    return f(get_current_context(), *args, **kwargs)
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/pytext/main.py", line 303, in export
    export_saved_model_to_caffe2(model, output_path, output_onnx_path)
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/pytext/workflow.py", line 130, in export_saved_model_to_caffe2
    task.export(task.model, export_caffe2_path, export_onnx_path=output_onnx_path)
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/pytext/task/task.py", line 189, in export
    self.exporter.export_to_caffe2(model, export_path, export_onnx_path)
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/pytext/exporters/exporter.py", line 192, in export_to_caffe2
    export_onnx_path,
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/pytext/utils/onnx_utils.py", line 50, in pytorch_to_caffe2
    onnx.checker.check_model(onnx_model)
  File "/data/erippeth/anaconda3/envs/pytext/lib/python3.6/site-packages/onnx/checker.py", line 86, in check_model
    C.check_model(model.SerializeToString())
onnx.onnx_cpp2py_export.checker.ValidationError: No Op or Function registered for ConstantFill with domain_version of 9

==> Context: Bad node spec: input: "75" output: "76" op_type: "ConstantFill" attribute { name: "input_as_shape" i: 1 type: INT }
Titousensei commented 5 years ago

Repro confirmed on linux (ubuntu). Works on mac.

erip commented 5 years ago

FWIW:

➜  ~ cat /etc/redhat-release
CentOS Linux release 7.5.1804 (Core)
houseroad commented 5 years ago

We recently removed ConstantFill from onnx operator set, since it's an experimental operator. We also stop emitting ConstantFill in PyTorch as well. However, the release version is not out yet. So short term solution is install the previous release version of ONNX. I am wondering how the onnx is installed on your system. if you use pip, could you try pip install onnx==1.3.0 and check whether you still have the problem or not.

houseroad commented 5 years ago

A related PR https://github.com/facebookresearch/pytext/pull/241, which pin onnx version in requirements

erip commented 5 years ago

My system had onnx 1.4.1. Once I pinned it to 1.3.0, it still segfaults with python 3.7.2; it completes successfully with python 3.6.8.

houseroad commented 5 years ago

I adding wheel for python 3.7 as well. Hopefully, that may solve the problem.